PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c3_24664V3.1.p

Common Name

PHYPADRAFT_173346

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

TCP

Protein Properties

Length: 309aa MW: 31767.3 Da PI: 6.8026

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c3_24664V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	81	3.1e-25	1	109	24	111
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.........................k 89 ++a+caar+F+L++eLG+++d++tieWLlq+a++ai+++tgt++++a ++ ++s +ssas + Pp3c3_24664V3.1.p 1 MPATCAARIFQLTRELGHKSDGETIEWLLQKAEQAIIAATGTGTIPAIASsIQGSIRSSAS----MavaaagragmhgslglsgpgggptaE 88 9*****************************************9999955543333333333....122234445566667777777776532 PP TCP 90 aaksaakskksqksaasalnla 111 +++s ++++ ++ s + ++ Pp3c3_24664V3.1.p 89 EMQSR-MQQEQAQRGRSEWGVS 109 22222.3333333333344444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	20.621	1	39	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.3E-22	1	99	IPR005333	Transcription factor, TCP

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MPATCAARIF QLTRELGHKS DGETIEWLLQ KAEQAIIAAT GTGTIPAIAS SIQGSIRSSA 60 SMAVAAAGRA GMHGSLGLSG PGGGPTAEEM QSRMQQEQAQ RGRSEWGVSA DERVMDVSRR 120 MSLGHGDPGM SHDLMAGFQH QDLVGGPSEV GEGMESSDSR MRKRPRGGPL QSRMKEDPDQ 180 PARPVRTTAR QSMQQQVGQG QHQGGGSSSM MPAAMWAVAP VGAGVSSSGT MPGTIWMLPM 240 SASQGGATQG VMPGQSEQQI WTFPAASGQY RMTAAAGTSI QLGPGGSGGS GQGHQQGDSG 300 DDHTSSHS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.13312	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024371651.1	0.0	transcription factor TCP22-like isoform X3
TrEMBL	A0A2K1KVU9	0.0	A0A2K1KVU9_PHYPA; Uncharacterized protein
STRING	PP1S446_21V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	5e-15	TCP family protein

Link Out ? help Back to Top
Phytozome	Pp3c3_24664V3.1.p
Entrez Gene	5948350

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]