PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_23940V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family SBP
Protein Properties Length: 1215aa    MW: 133353 Da    PI: 6.6716
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_23940V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.33e-40201278178
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        +Cqv++C+adls+ak+y+rrhkvCe+hska+++ vs l+qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+q+
  Pp3c3_23940V3.1.p 201 MCQVDACKADLSKAKDYYRRHKVCETHSKATKAPVSRLMQRFCQQCSRFHPLQEFDEGKRSCRRRLAGHNRRRRKTQP 278
                        6**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.2E-33195263IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.359199276IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.32E-37200280IPR004333Transcription factor, SBP-box
PfamPF031101.2E-29202275IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.201.1E-10367385IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.1E-109011082IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.64E-99211081IPR020683Ankyrin repeat-containing domain
CDDcd002042.14E-99321082No hitNo description
SMARTSM0024831959989IPR002110Ankyrin repeat
SMARTSM0024835010231053IPR002110Ankyrin repeat
PROSITE profilePS5029710.52410231083IPR020683Ankyrin repeat-containing domain
SMARTSM0024838010631092IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1215 aa     Download sequence    Send to blast
MERDIRQAGV DSRSHISPPL FQHQFFPAGG VQPSIANNVE NSNGRLSSAD GGHNTEEGIE  60
HPSHWDMKTW NWDSIQFVAQ RAGERGDGSF EEQREHGNNG SDGNHRASAT VVTIDRPCSG  120
ERRRRSNEED ERGKYFLEME TPSPPLNDGH AFPGDDDSQE AVGSLSLKLG GDAYAHIEEN  180
GGGSRNGKRN RSSSPQYQVP MCQVDACKAD LSKAKDYYRR HKVCETHSKA TKAPVSRLMQ  240
RFCQQCSRFH PLQEFDEGKR SCRRRLAGHN RRRRKTQPDA AAAQALLVAE EERLSKGGSG  300
LIGSLLNILS HLMGTTNLDR FNAPVLDREA LLRKVITASL EDINRTTPLW AQLLANPHHL  360
TSLLGQQPQQ LAASNGHVAN VNVDTQHLLS RLTSPSPEAL LLMLQNSLDA QIAAASITIQ  420
NNLGSQMHGA SGLGNFPLGS TCGLETQLAP PRTTETCVAP TSAGVSHSLL SSPMLARGSS  480
LKDVVRPTPM VPKPLPQLNS EQLVQHGIPA VQSSFMPYQA HAGSPTKKHA SNGLGPTIFN  540
HFPTDGRLLP ISPTVDPSSS ARQEVNLQLP LRQSSGSSQS GSDEPLPSSS HAREPRNWTR  600
RIAMKLFERN PEELPLDLRF QIDSWLAHLP SDMESYIRPG CLVLTIFVSM PVCGWAELDA  660
DLQGSVQRLL DLHEGDFWHK GRILVQVERQ TVLIVDGIIQ DKRLVDSWSR PYIQSVRPLA  720
VEADQAANIT VKGFNLTLPD TRVLCAHRGK YLIQHGSTDS NEAEVAFNDI EDDLDSCTGQ  780
SMDLSTSYSN VETSLRLDAK FTSCVEHPYA VGRCFLEVEH DTTLANARPL IIADRWVCSE  840
LCTLEEEVEV IASRTTQAAL LEGLQPVEVI GCSQVARLVM EEDVASFLYE LGWYFGGGIS  900
RQMDDTAELN VVSATRLKCL LIFSVERSWC AVVRKLLDVT LEGQNIDTSI ARLSKILRND  960
VSLLHRAVRR KSRNMVELLL AYVPSSISTE TIKNAGDTEK SGNSMQFNSQ WSTLFRPDIS  1020
GPAGLTPLHV AASMEDGEDI VDALTNDLFQ VGLHAWMNKR DDSGRTPLQY AMMGNHIKSI  1080
ELVSCKVAAL AGTSHQVCIS IPPDSLLQTL DQRSSRDVHD GSRGFSSLQL AEWVDSGTAP  1140
VKNLSINKTL APCRVHARRA HFGGISGPAF KPFLLSLVAI ATVCVCVCIL IRTPPSIRFV  1200
MQPFRWEGVD GGPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-31193275284squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.72170.0protonema
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00664PBMTransfer from Potri.002G002400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6475940.0EF647594.1 Physcomitrella patens SQUAMOSA promoter binding protein 11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024370445.10.0squamosa promoter-binding-like protein 1 isoform X2
TrEMBLA0A2K1KVS90.0A0A2K1KVS9_PHYPA; Uncharacterized protein
STRINGPP1S47_14V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25951432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.13e-92squamosa promoter binding protein-like 1