PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c3_23200V3.3.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

G2-like

Protein Properties

Length: 408aa MW: 44613.3 Da PI: 8.2858

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c3_23200V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.2	4.3e-34	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtpeLHerFv+av+qLGG++kAtPk+++++m+vkgLtl+h+kSHLQk+Rl Pp3c3_23200V3.3.p 45 KPRLRWTPELHERFVDAVNQLGGADKATPKSVMRVMGVKGLTLYHLKSHLQKFRL 99 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.742	42	102	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.4E-33	43	100	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.23E-17	44	100	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-23	45	100	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-8	47	97	IPR001005	SANT/Myb domain
Pfam	PF14379	5.2E-20	144	190	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MYQIKKYPNP GMNPHRQQQI MSFQDRGPSM YASHMSGDLS PTDPKPRLRW TPELHERFVD 60 AVNQLGGADK ATPKSVMRVM GVKGLTLYHL KSHLQKFRLG KQLQRDSHEA NKDATYGSSH 120 LRGTSSDSKF SPANHQNPQD EYVNVNEALQ LQMAAQIRLQ EQLEVQKQLQ QRIEAQGKYL 180 QSILEKAKET LADHTSASPV LKEVHEELTT LASKVINYEA PKPAFESIKL PGLNPPELSH 240 KHGTADSQGD IPHAAHNLQQ QQSRVQSGAV SQKSFLANLS TNQEDNGSER QTGTEGGSNC 300 SSHDAFTVEN GVSGSAFERP PPRNAPSPAD HRDNNTSSGG YSWPSAASCH GNIMTAPPNR 360 LVAPQRVKAE ASSLDLNNHG SNGNGNATPF QGNKGGLDLN AFGWEQR*

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MYQIKKYPNP GMNPHRQQQI MSFQDRGPSM YASHMSGDLS PTDPKPRLRW TPELHERFVD  60
AVNQLGGADK ATPKSVMRVM GVKGLTLYHL KSHLQKFRLG KQLQRDSHEA NKDATYGSSH  120
LRGTSSDSKF SPANHQNPQD EYVNVNEALQ LQMAAQIRLQ EQLEVQKQLQ QRIEAQGKYL  180
QSILEKAKET LADHTSASPV LKEVHEELTT LASKVINYEA PKPAFESIKL PGLNPPELSH  240
KHGTADSQGD IPHAAHNLQQ QQSRVQSGAV SQKSFLANLS TNQEDNGSER QTGTEGGSNC  300
SSHDAFTVEN GVSGSAFERP PPRNAPSPAD HRDNNTSSGG YSWPSAASCH GNIMTAPPNR  360
LVAPQRVKAE ASSLDLNNHG SNGNGNATPF QGNKGGLDLN AFGWEQR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-21	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-21	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-21	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-21	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.2771	0.0	gametophore\| protonema

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024371377.1	0.0	protein PHR1-LIKE 2-like isoform X1
Refseq	XP_024371378.1	0.0	protein PHR1-LIKE 2-like isoform X1
Swissprot	Q94A57	9e-64	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A2K1KVP4	0.0	A0A2K1KVP4_PHYPA; Uncharacterized protein
STRING	PP1S47_90V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	4e-58	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c3_23200V3.3.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]