PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_21440V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 762aa    MW: 81279 Da    PI: 7.1009
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_21440V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32e-30369427259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+Hnh+
  Pp3c3_21440V3.1.p 369 NDGCQWRKYGQKMAKGNPCPRAYYRCTVApGCPVRKQVQRCADDISILVTTYEGTHNHP 427
                        8***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.5E-499133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.743107136IPR007087Zinc finger, C2H2
PROSITE patternPS000280109131IPR007087Zinc finger, C2H2
Gene3DG3DSA:2.20.25.802.5E-32353427IPR003657WRKY domain
SuperFamilySSF1182902.09E-27361428IPR003657WRKY domain
PROSITE profilePS5081128.438363429IPR003657WRKY domain
SMARTSM007748.0E-38368428IPR003657WRKY domain
PfamPF031067.8E-27369427IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MGTSNAESGD KEAAGRFDTM IMAAVVEEKH LKKSSGRVDM VSRIDLSVKL DEDSLGEDEE  60
MEISEPEEDS RTRSDHHMTN MKDEEVSSPQ PKLQLGPQQY HENRHAFKCE VRGCVSVFRD  120
RTQLVNHSLV HRGTSGSERS TLEDESPPAS TAGLTASEAN QLKNELLVSR AEITRLVAEN  180
ERFRSMLTHL TSEYRNLQMH MVTSMQRHSD TVNYPVQSPT AQSASVTPAS YEASLKGSSD  240
RDSKHHRGSP PKSPAREQTS KQSSGTHLQY DRVQKIEDIS VGTTSRPGSG TSSPTRSPTA  300
RSHPTSPSQE ADHLQERASD QSEWQANKIQ KATHTDVHTA LPISQIEADP IVRKARVSVR  360
ARSDAPTIND GCQWRKYGQK MAKGNPCPRA YYRCTVAPGC PVRKQVQRCA DDISILVTTY  420
EGTHNHPLAP AAAVMASTTS AAACMLLSGS TTSDMNHMTT APQFIQLAGP QGQNTTALPI  480
ISASAPFPTI TLDLTSNPTT QLSLRLNNSS GATPSNFQGE AIGGVTVAQS GGQQVMMAPQ  540
QPVTRSNPIF FNNGMTYAPM VANCAPLSNS GSAFASEGAS SDHQAMQYHH PVVNSAAGRT  600
YGENRQQGTH TPANSLASNH CSATQSLAES VTAATAAITS DPSFTAALAA AITSIISSQN  660
CQNTPNKLAQ MTSNQTKEGY QQSTSSTPSA FTAVGASGSL RVEGGRVSPS RVVPGEAALS  720
SILTSALMSL NAKDQPSNGM VQFVKPSASH SSLVVADTVH P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-21358428776Probable WRKY transcription factor 4
2lex_A2e-21358428776Probable WRKY transcription factor 4
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.183440.0protonema
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024371987.10.0WRKY transcription factor 6-like
TrEMBLA0A2K1KVG70.0A0A2K1KVG7_PHYPA; Uncharacterized protein
STRINGPP1S47_251V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.13e-43WRKY family protein