PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_20640V3.2.p
Common NamePHYPADRAFT_162837
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 371aa    MW: 41095.9 Da    PI: 4.9741
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_20640V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.51.2e-1190139251
                AP2   2 gykGVrwdkkrgrWvAeIrd..pseng.krkrfslgkfgtaeeAakaaiaark 51 
                        ++ GVr++   ++Wv+eIr+  +   + + k+++lg+f t+e+Aa+  + ark
  Pp3c3_20640V3.2.p  90 RFYGVRFRQDLQKWVSEIRVqqW---KlVDKKVWLGTFYTEEGAARGVDLARK 139
                        677*****************422...3444*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-889141IPR016177DNA-binding domain
SMARTSM003804.1E-490158IPR001471AP2/ERF domain
PROSITE profilePS5103213.23590152IPR001471AP2/ERF domain
PfamPF008475.0E-590139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-1190140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MVESSSSAPA TRYSALEDFM RTKETAKEKC RQCRRAACCH GNSPSKVNGE YLEAVTSTSV  60
ANGRSPTKRK RGAAVEAQSS PKRKKVSSSR FYGVRFRQDL QKWVSEIRVQ QWKLVDKKVW  120
LGTFYTEEGA ARGVDLARKL LGCNKPRGPN LPCKELDEYS GQIPDTINLS DIKSTSMFKE  180
ATTFIKRRCQ EYAAQFAPTE VGNPNQILDQ IEEIQECDVD FEPTVFDAAS PSRELTVEDY  240
CFEEFSFLTP IFDQIPPQFD ATTSSSCLAY QGTGVDELNL SQSTASSKSR DPVTGEEETL  300
WPGDTGLNAA SHLWGADYLQ YPCFLNPSIV FAGPILGQDP PAASAPWDGS WLTGEGLNWM  360
PHGTRRLCDE *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16884RKRGAAVEAQSSPKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024369445.10.0uncharacterized protein LOC112279331
TrEMBLA9S4810.0A9S481_PHYPA; Predicted protein
STRINGPP1S47_331V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.13e-07ERF family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]