PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_20640V3.1.p | ||||||||
Common Name | PHYPADRAFT_162837 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 371aa MW: 41095.9 Da PI: 4.9741 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.5 | 1.2e-11 | 90 | 139 | 2 | 51 |
AP2 2 gykGVrwdkkrgrWvAeIrd..pseng.krkrfslgkfgtaeeAakaaiaark 51 ++ GVr++ ++Wv+eIr+ + + + k+++lg+f t+e+Aa+ + ark Pp3c3_20640V3.1.p 90 RFYGVRFRQDLQKWVSEIRVqqW---KlVDKKVWLGTFYTEEGAARGVDLARK 139 677*****************422...3444*********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.85E-8 | 89 | 141 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.1E-4 | 90 | 158 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 13.235 | 90 | 152 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.0E-5 | 90 | 139 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-11 | 90 | 140 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MVESSSSAPA TRYSALEDFM RTKETAKEKC RQCRRAACCH GNSPSKVNGE YLEAVTSTSV 60 ANGRSPTKRK RGAAVEAQSS PKRKKVSSSR FYGVRFRQDL QKWVSEIRVQ QWKLVDKKVW 120 LGTFYTEEGA ARGVDLARKL LGCNKPRGPN LPCKELDEYS GQIPDTINLS DIKSTSMFKE 180 ATTFIKRRCQ EYAAQFAPTE VGNPNQILDQ IEEIQECDVD FEPTVFDAAS PSRELTVEDY 240 CFEEFSFLTP IFDQIPPQFD ATTSSSCLAY QGTGVDELNL SQSTASSKSR DPVTGEEETL 300 WPGDTGLNAA SHLWGADYLQ YPCFLNPSIV FAGPILGQDP PAASAPWDGS WLTGEGLNWM 360 PHGTRRLCDE * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 68 | 84 | RKRGAAVEAQSSPKRKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024369445.1 | 0.0 | uncharacterized protein LOC112279331 | ||||
TrEMBL | A9S481 | 0.0 | A9S481_PHYPA; Predicted protein | ||||
STRING | PP1S47_331V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16750.1 | 3e-07 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_20640V3.1.p |
Entrez Gene | 5924529 |
Publications ? help Back to Top | |||
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