PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_1980V3.2.p | ||||||||
Common Name | PHYPADRAFT_63850 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 278aa MW: 32219 Da PI: 4.7405 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 24.6 | 6.5e-08 | 9 | 42 | 7 | 46 |
AP2 7 rwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaa 46 r +++ rW +++r + kr+++g+fg+ eeA + a Pp3c3_1980V3.2.p 9 R-RRRGDRWTVQVRTN-----HgKRIWIGTFGSVEEA-QWA 42 4.555899****7772.....35**********6665.444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 10.942 | 3 | 46 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.79E-7 | 6 | 48 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.1E-4 | 6 | 39 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.2E-7 | 8 | 49 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MEGQTGYIRR RRGDRWTVQV RTNHGKRIWI GTFGSVEEAQ WAFNAAEVLT ERRIYDAEAF 60 GHHVFRTHKD QGVSYEEFVK LESKRYSVFK QHEPEVNRFL NRLPGQPEAL PQVVSDIAFT 120 IITNELRAAL VALNIAEWQF IAAEDMERWP SDAAEYLMGR RDYNAEYFGN HQFRAHNDPD 180 CAFRDFVVSE SLRYVSSRQL LLVDSWLNTS PNQLDILDPI ILDEPEEAGQ GSKEDEIPYL 240 FDQFNDQMST LPFWTPQVQD LISKLKEDVL SRLTLNG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.15747 | 0.0 | gametophore |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024372169.1 | 0.0 | uncharacterized protein LOC112280659 | ||||
TrEMBL | A9RBC9 | 0.0 | A9RBC9_PHYPA; Uncharacterized protein | ||||
STRING | PP1S1_388V6.1 | 0.0 | (Physcomitrella patens) |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_1980V3.2.p |
Entrez Gene | 5914455 |
Publications ? help Back to Top | |||
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