PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_1980V3.1.p
Common NamePHYPADRAFT_63850
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 278aa    MW: 32219 Da    PI: 4.7405
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_1980V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.66.5e-08942746
               AP2  7 rwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaa 46
                      r +++  rW +++r       + kr+++g+fg+ eeA + a
  Pp3c3_1980V3.1.p  9 R-RRRGDRWTVQVRTN-----HgKRIWIGTFGSVEEA-QWA 42
                      4.555899****7772.....35**********6665.444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.942346IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-7648IPR016177DNA-binding domain
PfamPF008472.1E-4639IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-7849IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEGQTGYIRR RRGDRWTVQV RTNHGKRIWI GTFGSVEEAQ WAFNAAEVLT ERRIYDAEAF  60
GHHVFRTHKD QGVSYEEFVK LESKRYSVFK QHEPEVNRFL NRLPGQPEAL PQVVSDIAFT  120
IITNELRAAL VALNIAEWQF IAAEDMERWP SDAAEYLMGR RDYNAEYFGN HQFRAHNDPD  180
CAFRDFVVSE SLRYVSSRQL LLVDSWLNTS PNQLDILDPI ILDEPEEAGQ GSKEDEIPYL  240
FDQFNDQMST LPFWTPQVQD LISKLKEDVL SRLTLNG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.157470.0gametophore
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024372169.10.0uncharacterized protein LOC112280659
TrEMBLA9RBC90.0A9RBC9_PHYPA; Uncharacterized protein
STRINGPP1S1_388V6.10.0(Physcomitrella patens)
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]