PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_19630V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 504aa    MW: 54506 Da    PI: 8.693
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_19630V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.7e-18269317355
                AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        ++GVr ++ +grW AeIrd       r r++lg+f+tae+Aa+a++ a+++l+g
  Pp3c3_19630V3.2.p 269 FRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEDAARAYDSAARALRG 317
                        8*******.**********32....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.746268325IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-28268325IPR001471AP2/ERF domain
SMARTSM003806.6E-33268331IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-20269325IPR016177DNA-binding domain
PfamPF008472.0E-12269317IPR001471AP2/ERF domain
PRINTSPR003671.8E-9269280IPR001471AP2/ERF domain
CDDcd000181.50E-29269325No hitNo description
PRINTSPR003671.8E-9291307IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MALHDMLGGT VLAKRKWRGI SPDNCTAKRA NFSGFNSSAS SLLLVDNIDI PVLQDMDYSH  60
RFSGDQYLYE ILGELNPTSF LAGYGESETE VSPVPASFQS CESPNSSVEV QDLDGIAAVV  120
GQTVLFGKPE TCDLNQDHCS ALLTSAFSME RSSWLAPPAR QGDNQLAAQV NQISPTHSWN  180
FGLASPTSQY PKQFTADGLR FALSNFRPTP DRILMKQSAD VKPKFQPQLY GSVENCRHSL  240
DVSPTGVMPS LGKSSAAKVP AATSTGRSFR GVRKRPWGRW SAEIRDRIGR CRHWLGTFDT  300
AEDAARAYDS AARALRGSKA KTNFAPPCSD DLRGKIESTV CNQLSICRSQ LTSRAQAVRR  360
TNPAPQRRSY GSTVPSYSKE CKGSKLSSAK GVIRVSDEVR TSEFMTHPPK KGVLLQSAML  420
SQNQAHALLG RDCSGSSAGR SLELDLKLGF GLSPKSCSSL ESTQESTVTY QSSECSFPSV  480
SELYSSSSFS PGSPSPLSSH AWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-16264324162ATERF1
3gcc_A3e-16264324162ATERF1
5wx9_A3e-162693241571Ethylene-responsive transcription factor ERF096
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024369954.10.0uncharacterized protein LOC112279587
TrEMBLA0A2K1KVA40.0A0A2K1KVA4_PHYPA; Uncharacterized protein
STRINGPP1S204_42V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.14e-21ERF family protein