PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_19630V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 504aa MW: 54506 Da PI: 8.693 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.5 | 1.7e-18 | 269 | 317 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +grW AeIrd r r++lg+f+tae+Aa+a++ a+++l+g Pp3c3_19630V3.1.p 269 FRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEDAARAYDSAARALRG 317 8*******.**********32....25*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.746 | 268 | 325 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-28 | 268 | 325 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.6E-33 | 268 | 331 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-20 | 269 | 325 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.0E-12 | 269 | 317 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-9 | 269 | 280 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.50E-29 | 269 | 325 | No hit | No description |
PRINTS | PR00367 | 1.8E-9 | 291 | 307 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 504 aa Download sequence Send to blast |
MALHDMLGGT VLAKRKWRGI SPDNCTAKRA NFSGFNSSAS SLLLVDNIDI PVLQDMDYSH 60 RFSGDQYLYE ILGELNPTSF LAGYGESETE VSPVPASFQS CESPNSSVEV QDLDGIAAVV 120 GQTVLFGKPE TCDLNQDHCS ALLTSAFSME RSSWLAPPAR QGDNQLAAQV NQISPTHSWN 180 FGLASPTSQY PKQFTADGLR FALSNFRPTP DRILMKQSAD VKPKFQPQLY GSVENCRHSL 240 DVSPTGVMPS LGKSSAAKVP AATSTGRSFR GVRKRPWGRW SAEIRDRIGR CRHWLGTFDT 300 AEDAARAYDS AARALRGSKA KTNFAPPCSD DLRGKIESTV CNQLSICRSQ LTSRAQAVRR 360 TNPAPQRRSY GSTVPSYSKE CKGSKLSSAK GVIRVSDEVR TSEFMTHPPK KGVLLQSAML 420 SQNQAHALLG RDCSGSSAGR SLELDLKLGF GLSPKSCSSL ESTQESTVTY QSSECSFPSV 480 SELYSSSSFS PGSPSPLSSH AWH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-16 | 264 | 324 | 1 | 62 | ATERF1 |
3gcc_A | 3e-16 | 264 | 324 | 1 | 62 | ATERF1 |
5wx9_A | 3e-16 | 269 | 324 | 15 | 71 | Ethylene-responsive transcription factor ERF096 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024369954.1 | 0.0 | uncharacterized protein LOC112279587 | ||||
TrEMBL | A0A2K1KVA4 | 0.0 | A0A2K1KVA4_PHYPA; Uncharacterized protein | ||||
STRING | PP1S204_42V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80580.1 | 4e-21 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_19630V3.1.p |