PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_19360V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | MYB | ||||||||
Protein Properties | Length: 534aa MW: 58510.7 Da PI: 7.8375 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.3 | 2.7e-16 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEde+l ++v+ +G+g+W+++ ++ g+ R++k+c++rw +yl Pp3c3_19360V3.1.p 13 KGAWAAEEDEKLRKYVETYGTGHWRSVGKKAGLQRCGKSCRLRWTNYL 60 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 57.2 | 3.7e-18 | 67 | 109 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++T+eE+ l+v++++ +G++ W++Ia+ m+ gRt++++k++w++ Pp3c3_19360V3.1.p 67 GSFTQEEENLIVKLHAAHGSR-WSLIAAQMP-GRTDNDIKNHWNT 109 78*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.917 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.9E-30 | 11 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-13 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 13 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-23 | 14 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.11E-11 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 27.736 | 61 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-16 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-16 | 67 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.06E-12 | 68 | 111 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-26 | 68 | 115 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 534 aa Download sequence Send to blast |
MTRLLKSNED VRKGAWAAEE DEKLRKYVET YGTGHWRSVG KKAGLQRCGK SCRLRWTNYL 60 RPDIRHGSFT QEEENLIVKL HAAHGSRWSL IAAQMPGRTD NDIKNHWNTR LKKKLCDLGI 120 DPVTHKPIAD LLRDLAGTIA NSSGTGNQVA EEAARRCFRD NLVSKAVREC GKAKPALASQ 180 YMLHKSLNDV HRRDVQGTED LTMSELHAGD IVQKSSNNSG SHSMDESSST EEALSRRSNS 240 PPDSIDFEHL NQHRYQASTG DHHQSDIEQR TAGTVVESSC GRIAYLSLAQ MNEANMSGFM 300 GARSSALPSF QEVDQVGCSL PASSLPNAGS DQFDYRNTDF GKVINVFRSN APISDSPTRP 360 VVQQRADGTR WSASRSALSQ DAHLPISPSC AASQLPLSRF SSEVHNQLAQ SHAEVSYMQG 420 SDLSRPQSTS APSKLDVRIN LGYNQQRPLP ESFGYRNFSG PSTTSSTSTP GSVLDMTTQQ 480 TLPGYGGQYS SSSSATNANH TSFNSPLAGT PTGLRLHECE VPSPRMVLWD FQE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-28 | 10 | 115 | 4 | 108 | B-MYB |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024369860.1 | 0.0 | transcription factor RAX1-like isoform X2 | ||||
TrEMBL | A0A2K1KV94 | 0.0 | A0A2K1KV94_PHYPA; Uncharacterized protein | ||||
STRING | PP1S204_13V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56110.1 | 6e-60 | myb domain protein 103 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_19360V3.1.p |