PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_19160V3.1.p
Common NamePHYPADRAFT_171809
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 657aa    MW: 69469.1 Da    PI: 6.9482
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_19160V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.2e-09451498455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Pp3c3_19160V3.1.p 451 SHSLAERVRREKISERMKYLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 498
                        8*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-16445512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.01E-10445502No hitNo description
PROSITE profilePS5088815.701447497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-17447511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-6451498IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-10453503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MAFMSPAPDQ ATVFGGLVKK SMSIPSSFNT AAMSPTDSMN SLYSLEKQLV GQPRSNAALS  60
GVPGVSGFSR SATNYWGHAT STDMQQILGD SASVSPQEAL GSGMVSSDWQ QLLDAKSSAY  120
KYPPGVSAAA TPARGGIMEN ARIREMLTGR VGGSPVPHKS WSPLDTVAAG IAVDQSKGGL  180
ALHGVDLATS HCLAQFTSDP AFAERAAKFS SFGNGKYPQI ALSLPVNDAH CKPRSRSSES  240
GCKSSRTTCN PNSAKKSTAT VAAGMEENTA AAPAAASVLA APAAADRSCD MDVDGVGNND  300
KSPTRTASVP ELEAIEGASL VTMDRTHELA EVAAGLEPNN SSSVTEQQQA SAASPARSPT  360
GSDDSDRRKR KSSSADKLDV DSKAADVADS QPKRCKGDND DLVKAKAERS SSENSGDSGS  420
PRAHKENNSS KDHAKQDYIH VRARRGQATD SHSLAERVRR EKISERMKYL QDLVPGCSKV  480
TGKAVMLDEI INYVQSLQRQ VENLSMKLAS VNPGPSSTRI DHNFETTMNK DMLQSQMSGS  540
LGGSESTTTF GMMQQHQHQP QPQGHMMNGH CGLDFRAMGT SMDGYLRRSN SAPIRVQSGI  600
TSLDSFGDDV SQSIGWDGEL QSIVNQMGFS FQGRYGSSPL DSLQCQLPVG HMKVEM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024370058.10.0uncharacterized protein LOC112279654
TrEMBLA9TT600.0A9TT60_PHYPA; Predicted protein
STRINGPP1S145_69V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.37e-44bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]