PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_17650V3.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NF-YC | ||||||||
Protein Properties | Length: 232aa MW: 26341.3 Da PI: 6.0182 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 172.8 | 3.7e-54 | 49 | 153 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 ql +fw++q +e+++dfk h+lPlarikki+k+dedvkmi+aeaPvl+skace+fileltlrsw+h+eenkrrtl+++dia a+tr dif Pp3c3_17650V3.5.p 49 QLSQFWAQQmqeMEQVNDFKTHQLPLARIKKIMKSDEDVKMIAAEAPVLFSKACEMFILELTLRSWIHTEENKRRTLQRNDIAGAITRGDIF 140 7999***998889******************************************************************************* PP NF-YC 90 dflvdivprdelk 102 dflvdivprdelk Pp3c3_17650V3.5.p 141 DFLVDIVPRDELK 153 **********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.32E-32 | 33 | 143 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 7.9E-37 | 62 | 135 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.3E-21 | 71 | 134 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MAIQHPHMPP SSAPQMAPHP GPVMPLQMHY QAQGQQQTQL HYQQIQKQQL SQFWAQQMQE 60 MEQVNDFKTH QLPLARIKKI MKSDEDVKMI AAEAPVLFSK ACEMFILELT LRSWIHTEEN 120 KRRTLQRNDI AGAITRGDIF DFLVDIVPRD ELKEEDLGVP WSGVPGIPAE GVQYGGMYYP 180 PMPGQPMHHP MGAPEMMVGQ PGMPPNPQMM YQPPPAAFAP EQQQQQQQQM Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 5e-53 | 57 | 149 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 121 | 127 | RRTLQRN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.2519 | 0.0 | gametophore| protonema| sporophyte |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:17322342, ECO:0000269|PubMed:9662544}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024369382.1 | 1e-167 | nuclear transcription factor Y subunit C-2-like | ||||
Swissprot | Q9SMP0 | 1e-67 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A2K1KUV7 | 1e-124 | A0A2K1KUV7_PHYPA; Uncharacterized protein | ||||
STRING | PP1S315_9V6.3 | 1e-166 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP315 | 17 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 1e-63 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_17650V3.5.p |
Publications ? help Back to Top | |||
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