PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c3_17580V3.2.p

Common Name

PHYPADRAFT_228394

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

MYB

Protein Properties

Length: 808aa MW: 91607.9 Da PI: 5.957

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c3_17580V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.4	7.8e-14	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l Pp3c3_17580V3.2.p 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	31.9	3.1e-10	60	103	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tI+ +g Rt+ qc +r+ k+l Pp3c3_17580V3.2.p 60 TEWTREEDEKLLHLAKLMPTQ-WRTISPIVG--RTPAQCLERYEKLL 103 68***************99.****8..********9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	22.008	2	57	IPR017930	Myb domain
SMART	SM00717	7.0E-15	6	55	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.6E-18	9	60	IPR009057	Homeodomain-like
Pfam	PF13921	3.6E-13	10	70	No hit	No description
CDD	cd00167	1.13E-11	10	53	No hit	No description
SuperFamily	SSF46689	6.83E-21	33	107	IPR009057	Homeodomain-like
CDD	cd11659	3.81E-30	55	106	No hit	No description
PROSITE profile	PS51294	15.993	58	107	IPR017930	Myb domain
SMART	SM00717	6.2E-12	58	105	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-13	61	104	IPR009057	Homeodomain-like
Pfam	PF11831	1.0E-56	404	652	IPR021786	Pre-mRNA splicing factor component Cdc5p/Cef1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009870	Biological Process	defense response signaling pathway, resistance gene-dependent
GO:0010204	Biological Process	defense response signaling pathway, resistance gene-independent
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0009507	Cellular Component	chloroplast
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 808 aa Download sequence Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTISPIVGR TPAQCLERYE KLLDAACARD ESYEPADDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDGRQR RRKQKGIDYN AEIPFEKKPP SGFFEVGQEE RPVEQLQFPT 240 TIEELEGKRR ADIEAQLRKQ DIAANKIAQR KNAPAAVMQV NKLNDPEAVR KRSKLMLPAP 300 QISDAELEEI AKMGYAKDFI EAGSEEGSGV TRALLSNYSR TPMGMTPLQT SQRTPGGKGD 360 AIMMEAENLA RMRATQTPLF GGENPELHPS DFSGVTPKKK DIQTPNPIAT PLRTPSGAAT 420 PLRTPNSVYS MFPKGTPIRD DLHINEGSEM LGSESAKAEK LRQEELRRNL RAALGHLPAP 480 TNEYEILVPQ LPIEEKDDND DIEMDMADAI ALQQKEKEAA ELALWKKQTK VVQRGLPRPP 540 LPAIQALKTT LTLEEDGKNL YVSLIEHADL SIRQEMVALL ENDAAKYPPT EEETVKDKKK 600 GASRTVVAGR PPMDAPPLDD FEEEDINEAS RLIEDEVDYL KGAMGHEDAT LEDYAEARDG 660 CVDDLVYFPT RENFGLISVA STNDRLSALQ YEFENVKKHM EAETRKAVRL EHKLKVLTHG 720 YQVRAETLWR QIEALHKETV TLGTEYECFR ALHSQEQLAA PRRIENLQDA LKEQNDKERT 780 LQLRYENLLV EQENIKGFMR SHDERAS*

Sequence ? help Back to Top

Protein Sequence Length: 808 aa Download sequence Send to blast

MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTISPIVGR TPAQCLERYE KLLDAACARD ESYEPADDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDGRQR RRKQKGIDYN AEIPFEKKPP SGFFEVGQEE RPVEQLQFPT  240
TIEELEGKRR ADIEAQLRKQ DIAANKIAQR KNAPAAVMQV NKLNDPEAVR KRSKLMLPAP  300
QISDAELEEI AKMGYAKDFI EAGSEEGSGV TRALLSNYSR TPMGMTPLQT SQRTPGGKGD  360
AIMMEAENLA RMRATQTPLF GGENPELHPS DFSGVTPKKK DIQTPNPIAT PLRTPSGAAT  420
PLRTPNSVYS MFPKGTPIRD DLHINEGSEM LGSESAKAEK LRQEELRRNL RAALGHLPAP  480
TNEYEILVPQ LPIEEKDDND DIEMDMADAI ALQQKEKEAA ELALWKKQTK VVQRGLPRPP  540
LPAIQALKTT LTLEEDGKNL YVSLIEHADL SIRQEMVALL ENDAAKYPPT EEETVKDKKK  600
GASRTVVAGR PPMDAPPLDD FEEEDINEAS RLIEDEVDYL KGAMGHEDAT LEDYAEARDG  660
CVDDLVYFPT RENFGLISVA STNDRLSALQ YEFENVKKHM EAETRKAVRL EHKLKVLTHG  720
YQVRAETLWR QIEALHKETV TLGTEYECFR ALHSQEQLAA PRRIENLQDA LKEQNDKERT  780
LQLRYENLLV EQENIKGFMR SHDERAS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5mqf_L	0.0	2	797	3	800	Cell division cycle 5-like protein
5xjc_L	0.0	2	797	3	800	Cell division cycle 5-like protein
5yzg_L	0.0	2	797	3	800	Cell division cycle 5-like protein
5z56_L	0.0	2	797	3	800	Cell division cycle 5-like protein
5z57_L	0.0	2	797	3	800	Cell division cycle 5-like protein
5z58_L	0.0	2	797	3	800	Cell division cycle 5-like protein
6ff4_L	0.0	2	797	3	800	Cell division cycle 5-like protein
6ff7_L	0.0	2	797	3	800	Cell division cycle 5-like protein
6icz_L	0.0	2	797	3	800	Cell division cycle 5-like protein
6id0_L	0.0	2	797	3	800	Cell division cycle 5-like protein
6id1_L	0.0	2	797	3	800	Cell division cycle 5-like protein
6qdv_O	0.0	2	797	3	800	Cell division cycle 5-like protein
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	202	KRRELKAAGIDGRQRRRK
2	198	203	QRRRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.2492	0.0	protonema

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed extensively in shoot and root meristems. {ECO:0000269\|PubMed:8917598}.

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250\|UniProtKB:Q99459, ECO:0000269\|PubMed:17298883, ECO:0000269\|PubMed:17575050, ECO:0000269\|PubMed:8917598}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00028	SELEX	Transfer from AT1G09770	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024370979.1	0.0	cell division cycle 5-like protein
Swissprot	P92948	0.0	CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBL	A9U5D1	0.0	A9U5D1_PHYPA; Predicted protein
STRING	PP1S641_1V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	cell division cycle 5

Link Out ? help Back to Top
Phytozome	Pp3c3_17580V3.2.p
Entrez Gene	5949275

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Li S, et al. MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis. Plant Cell, 2018. 30(2): p. 481-494 [PMID:29437988]