PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_17230V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | Trihelix | ||||||||
Protein Properties | Length: 490aa MW: 54795.3 Da PI: 6.4522 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 40.9 | 5.2e-13 | 90 | 180 | 2 | 81 |
trihelix 2 WtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 W++ e aL++a re++ +l +++ ++ +W+ev + + g+ r+pk+ + kw+nl++ +k+i++++++++ ++ s + + Pp3c3_17230V3.3.p 90 WQDAEMDALVRAFREVHMKLTSAAgngkkvkqvfkSANDKWQEVRTLLLASGVDRQPKEIERKWSNLSTAFKQIADWNNNKKMGRPSYWDL 180 ***************9999998644455666666699*******************************************98888777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.0E-10 | 90 | 182 | No hit | No description |
Gene3D | G3DSA:3.40.50.620 | 1.4E-72 | 264 | 480 | IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold |
SuperFamily | SSF52374 | 2.62E-48 | 267 | 483 | No hit | No description |
Pfam | PF01467 | 5.7E-25 | 271 | 454 | IPR004821 | Cytidyltransferase-like domain |
TIGRFAMs | TIGR00482 | 1.0E-40 | 272 | 480 | IPR005248 | Probable nicotinate-nucleotide adenylyltransferase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009860 | Biological Process | pollen tube growth | ||||
GO:0034628 | Biological Process | 'de novo' NAD biosynthetic process from aspartate | ||||
GO:0000309 | Molecular Function | nicotinamide-nucleotide adenylyltransferase activity | ||||
GO:0004515 | Molecular Function | nicotinate-nucleotide adenylyltransferase activity | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence Send to blast |
MQVEDMEEDA PPTPAVLEGT LSSSILDLDQ TEGHNHNFGA TYGREGREGN LDEGDIGGSN 60 GGGTGVGEDE EDRPDKEGEG MARKRRAEIW QDAEMDALVR AFREVHMKLT SAAGNGKKVK 120 QVFKSANDKW QEVRTLLLAS GVDRQPKEIE RKWSNLSTAF KQIADWNNNK KMGRPSYWDL 180 DESLKKEKTK AKELPATFRM QLFDAMAEFM GDRHGPRSRS PAQAPAPSLL PAPGLPRPPP 240 APGVVDVPLP VEKLANLIDA ANHKRRRVVI LAPGSFNPPT YMHLRMFELG RDALIAEGYH 300 VLGGYMSPVN DLYQKKGLAP AEHRIRMCEL AVADSPFIMV DSWEAKQNTF QRTLTVMARI 360 DTVVNFNNCA ADEKVKVMLL CGCDFLESFT TPGVWIPDQV RTLLQEYGIV CVNQDSKDAR 420 RLVFEHEILY NNRRQILVVD EVIQNSISAT AIRRNLSRGL SVKYLTPDPV INHIKMNHLY 480 TNIPLRNDE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gzu_B | 6e-55 | 260 | 482 | 12 | 267 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1gzu_C | 6e-55 | 260 | 482 | 12 | 267 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kqn_A | 6e-55 | 262 | 482 | 3 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kqn_B | 6e-55 | 262 | 482 | 3 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kqn_C | 6e-55 | 262 | 482 | 3 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kqn_D | 6e-55 | 262 | 482 | 3 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kqn_E | 6e-55 | 262 | 482 | 3 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kqn_F | 6e-55 | 262 | 482 | 3 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kqo_A | 6e-55 | 262 | 482 | 3 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kqo_B | 6e-55 | 262 | 482 | 3 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kqo_C | 6e-55 | 262 | 482 | 3 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kqo_D | 6e-55 | 262 | 482 | 3 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kqo_E | 6e-55 | 262 | 482 | 3 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kqo_F | 6e-55 | 262 | 482 | 3 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kr2_A | 6e-55 | 262 | 482 | 3 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kr2_B | 6e-55 | 262 | 482 | 3 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kr2_C | 6e-55 | 262 | 482 | 3 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kr2_D | 6e-55 | 262 | 482 | 3 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kr2_E | 6e-55 | 262 | 482 | 3 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kr2_F | 6e-55 | 262 | 482 | 3 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 263 | 267 | KRRRV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.15988 | 0.0 | gametophore |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024370455.1 | 0.0 | uncharacterized protein LOC112279923 isoform X1 | ||||
Refseq | XP_024370456.1 | 0.0 | uncharacterized protein LOC112279923 isoform X1 | ||||
Refseq | XP_024370457.1 | 0.0 | uncharacterized protein LOC112279923 isoform X1 | ||||
Refseq | XP_024370458.1 | 0.0 | uncharacterized protein LOC112279923 isoform X1 | ||||
Refseq | XP_024370459.1 | 0.0 | uncharacterized protein LOC112279923 isoform X1 | ||||
Refseq | XP_024370460.1 | 0.0 | uncharacterized protein LOC112279923 isoform X1 | ||||
Refseq | XP_024370461.1 | 0.0 | uncharacterized protein LOC112279923 isoform X1 | ||||
TrEMBL | A0A2K1KUU3 | 0.0 | A0A2K1KUU3_PHYPA; Uncharacterized protein | ||||
STRING | PP1S523_22V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 4e-08 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_17230V3.3.p |