PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_15850V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 532aa    MW: 58414.9 Da    PI: 5.8579
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_15850V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.2e-12298341755
                        HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +Er+RR+++N+++  Lr l+Pk      +K++ a+iL  A+eY+k+Lq
  Pp3c3_15850V3.1.p 298 VAERKRRKKLNERLYSLRALVPKI-----TKMDRASILGDAIEYVKELQ 341
                        68*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.8E-2710158IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000834.93E-15288345No hitNo description
SuperFamilySSF474591.96E-16291351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.84291340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-16297346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16298351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-10298341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550213.34E-7423490No hitNo description
Gene3DG3DSA:3.30.70.2603.6E-5425490No hitNo description
PROSITE profilePS516719.92426505IPR002912ACT domain
CDDcd048731.63E-7429491No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MSKQAGGGVQ ERLRSIVGPK GWDYAVFWQL RDETRTLDWI GCCCSGAEAP GNDHLGASSS  60
TRYLESSTGC PDVRGFHPAT HICSLLAAMP SSVSLDSGIQ GRVFLGGQPK WVHGDSSMEG  120
QELTVQTKVC IPVQSGLVEL GVANHVTENA ALVNYVRNRC GEQWQAGTVS KQGGSGNTTL  180
GTMGQQAVKM YYTRHFANNL DSSWPSSHPW EQEDPTLESQ LMGSMDQDLM NQLPSSTTHF  240
PHHGTLTDSP RGSGLSKDDG EVKQEMRGES SDCSDPIDDD DEKGGTRSTR RHLSKNLVAE  300
RKRRKKLNER LYSLRALVPK ITKMDRASIL GDAIEYVKEL QQQVKELHEE LVDNKDNDMT  360
GTLGFDEEPV TADQEPKLGC GIVIGRSCPK VDSQSVVIEV VDRKGDHELT QPMQVEVNKM  420
DGRLFSLRIF CEKRPGVFVK LMQALDVLGL NVVHANITTF RGLVLNIFNA EVRDKELIGV  480
EQMRDTLLEM ATLQSGHRPL PLPPSDGTSL QTSIMSGDQR LEKVTHLGPL P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-142993561269Transcription factor MYC2
5gnj_B9e-142993561269Transcription factor MYC2
5gnj_E9e-142993561269Transcription factor MYC2
5gnj_F9e-142993561269Transcription factor MYC2
5gnj_G9e-142993561269Transcription factor MYC2
5gnj_I9e-142993561269Transcription factor MYC2
5gnj_M9e-142993561269Transcription factor MYC2
5gnj_N9e-142993561269Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1299306ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024372222.10.0transcription factor ABORTED MICROSPORES-like
RefseqXP_024372223.10.0transcription factor ABORTED MICROSPORES-like
RefseqXP_024372224.10.0transcription factor ABORTED MICROSPORES-like
RefseqXP_024372225.10.0transcription factor ABORTED MICROSPORES-like
RefseqXP_024372227.10.0transcription factor ABORTED MICROSPORES-like
RefseqXP_024372228.10.0transcription factor ABORTED MICROSPORES-like
RefseqXP_024372229.10.0transcription factor ABORTED MICROSPORES-like
RefseqXP_024372230.10.0transcription factor ABORTED MICROSPORES-like
RefseqXP_024372231.10.0transcription factor ABORTED MICROSPORES-like
RefseqXP_024372232.10.0transcription factor ABORTED MICROSPORES-like
RefseqXP_024372233.10.0transcription factor ABORTED MICROSPORES-like
RefseqXP_024372234.10.0transcription factor ABORTED MICROSPORES-like
RefseqXP_024372235.10.0transcription factor ABORTED MICROSPORES-like
RefseqXP_024372236.10.0transcription factor ABORTED MICROSPORES-like
RefseqXP_024372238.10.0transcription factor ABORTED MICROSPORES-like
RefseqXP_024372239.10.0transcription factor ABORTED MICROSPORES-like
RefseqXP_024372240.10.0transcription factor ABORTED MICROSPORES-like
RefseqXP_024372241.10.0transcription factor ABORTED MICROSPORES-like
TrEMBLA0A2K1KUP50.0A0A2K1KUP5_PHYPA; Uncharacterized protein
STRINGPP1S25_255V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP37041323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.16e-42bHLH family protein