PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_15040V3.7.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | WRKY | ||||||||
Protein Properties | Length: 689aa MW: 76474.6 Da PI: 6.2992 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.6 | 3.9e-31 | 356 | 414 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDg++WrKYGqK vk+s++pr+YYrCt+++Cpv+k+vers ed +v++tYeg+H+h+ Pp3c3_15040V3.7.p 356 MDDGFKWRKYGQKAVKNSPYPRNYYRCTTPQCPVRKRVERSCEDSGLVITTYEGTHTHQ 414 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-32 | 343 | 416 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-28 | 349 | 416 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.836 | 351 | 416 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.2E-36 | 356 | 415 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-24 | 357 | 414 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 689 aa Download sequence Send to blast |
MVVRKRRNQA RTDYSSKTSD HLKFPVLDRG HVIPGEACVV DSLVEIYQQR LALDEEGGDD 60 TGSNRESSFL SQDEFQRKSE RSGREVASPV NSTGIAGLQL NFDLVTMSPN PAMNPFLVDS 120 SSYAAESPWM ALRELEQQRT ATSQSHSSHD VGVRQGCEYA KEMARTPSDT ILHAELETDW 180 FRSSDNHFGP ECAASLSEDI KIGSTHPGHG NIQEAGMRHA QGEDMVESRM DRESSSPFMA 240 VHEADGSAAT QPNNVELSQN SSLSLSGSGG DSDEEWVRNA VVSSEAGERS GKRKSPNSSA 300 TGEFREADFD KPSSDAAELM QSKYSESATL RRRKKNVKTL RKPIYAIETR TDVDIMDDGF 360 KWRKYGQKAV KNSPYPRNYY RCTTPQCPVR KRVERSCEDS GLVITTYEGT HTHQTPGLFS 420 HPSAASGHGL PESKNPLGHG FEHFQIPRSP SLLPHPTEVS ALAVLQHMRI MQQLQDMSQQ 480 QIAPPDPLLA GSLQQESLLR AQQFLGLYDH PTGAIDRESF QYLPHARGSV SHAPSPYPSR 540 PSFHPTSETI LDRMHMLITP QHMRSRGTPE QSLHPATMDL DYHGYQHQMT SSPSQCDDLV 600 RRVLEAEEEG PVDVDVRDGS LSSDAKSDPA SASSETRTAT QSDFVTQLQT ELRNRMEKTF 660 LPSPTPPPPK GSVRRRWSKT MRNRGCEE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-26 | 346 | 416 | 4 | 74 | WRKY transcription factor 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024369755.1 | 0.0 | uncharacterized protein LOC112279497 isoform X1 | ||||
Refseq | XP_024369756.1 | 0.0 | uncharacterized protein LOC112279497 isoform X1 | ||||
Refseq | XP_024369757.1 | 0.0 | uncharacterized protein LOC112279497 isoform X1 | ||||
Refseq | XP_024369758.1 | 0.0 | uncharacterized protein LOC112279497 isoform X1 | ||||
TrEMBL | A0A2K1KUN9 | 0.0 | A0A2K1KUN9_PHYPA; Uncharacterized protein | ||||
STRING | PP1S25_173V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 3e-33 | WRKY DNA-binding protein 57 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_15040V3.7.p |