PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c3_14260V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

NF-YB

Protein Properties

Length: 296aa MW: 32007.7 Da PI: 8.8351

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c3_14260V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	185.2	5.1e-58	153	248	1	96
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 vreqdrflPian+srimkk+lPanaki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa++tlGfedyveplkvyl+kyre Pp3c3_14260V3.1.p 153 VREQDRFLPIANISRIMKKALPANAKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMSTLGFEDYVEPLKVYLHKYRE 244 69****************************************************************************************** PP NF-YB 93 lege 96 +eg+ Pp3c3_14260V3.1.p 245 TEGA 248 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.3E-56	149	262	IPR009072	Histone-fold
SuperFamily	SSF47113	1.35E-40	156	258	IPR009072	Histone-fold
Pfam	PF00808	9.5E-28	159	223	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	5.6E-22	187	205	No hit	No description
PROSITE pattern	PS00685	0	190	206	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	5.6E-22	206	224	No hit	No description
PRINTS	PR00615	5.6E-22	225	243	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MGKAHSVVPL PNQPPSLPPV ARFASVLPLP PSLAPISPSS LSSCSSYIRC RRCCPLLLPL 60 RPPLPSATPD PLSLPSLPPS LLHCLLGILT LLLHRRLALL GRLLSPTHGI RLGLPFRNIS 120 SMAEAGSPGS QDSPHSDDYG GNHGSGERDN SSVREQDRFL PIANISRIMK KALPANAKIA 180 KDAKETVQEC VSEFISFITS EASDKCQREK RKTINGDDLL WAMSTLGFED YVEPLKVYLH 240 KYRETEGALT NKAGESSSGK KEGSGMVSPG VQQGGYNPYM QAQMMNPGNY QVQHY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	6e-48	152	244	5	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.10907	0.0	protonema

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:11250072}.

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024369222.1	0.0	nuclear transcription factor Y subunit B-3-like isoform X2
Swissprot	O23310	2e-65	NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBL	A0A2K1KUH4	0.0	A0A2K1KUH4_PHYPA; Uncharacterized protein
STRING	PP1S25_89V6.1	1e-126	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	7e-66	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	Pp3c3_14260V3.1.p

Publications ? help Back to Top
Han X, et al. Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis. J. Exp. Bot., 2013. 64(14): p. 4589-601 [PMID:24006421] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Hossain MA, et al. Identification of Novel Components of the Unfolded Protein Response in Arabidopsis. Front Plant Sci, 2016. 7: p. 650 [PMID:27242851] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]