PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_13510V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 480aa    MW: 51812.9 Da    PI: 6.7835
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_13510V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.5e-19301352155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                        ++y+GVr+++ +g+++AeIrd       + +r++lg+f+tae+Aa a++aa+ k++g
  Pp3c3_13510V3.2.p 301 PHYRGVRQRP-WGKFAAEIRD----SarQGARVWLGTFDTAEQAAMAYDAAAFKMRG 352
                        68********.**********....33334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.4E-15301352IPR001471AP2/ERF domain
CDDcd000184.58E-21301360No hitNo description
SuperFamilySSF541711.18E-22302361IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-31302361IPR001471AP2/ERF domain
PROSITE profilePS5103223.67302360IPR001471AP2/ERF domain
SMARTSM003801.3E-35302366IPR001471AP2/ERF domain
PRINTSPR003678.5E-11303314IPR001471AP2/ERF domain
PRINTSPR003678.5E-11326342IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MNIFSFASTK RGRGLLEGKD TGLDFTKTEE VLQQAQQASK ETFNSQFLNC DQLAALASKT  60
FPSNELVSAC ETSPTSLHST GRTLLKRSRS VENAHFEEQK KPCHRAWVLS NQLRHSLGPN  120
FAETIGQVVK KEAGLATTSS RLDWSSQTPP YVKSLAQGCV AKQATTWPSS SPTDPNSAVV  180
HTREESRLWS DWQNQSSGGG AAPSQLHERA TQFPLNENDS EETALCQVLL GAGKTPPPAK  240
PSPVMRAQPR RHAFPEAAAM GFFKREQPGN LPSSINLIVS STAPRGSYIQ ASLPKVVRSI  300
PHYRGVRQRP WGKFAAEIRD SARQGARVWL GTFDTAEQAA MAYDAAAFKM RGCRALLNFP  360
LQATLPTLPP SPCKTEENTL KSETSSTSAN STTEVLDMGS VKAESPFSLP SAASTTAADP  420
ETTPVALELQ DLDTDFLEDL LSNSHPELDS RPTSSLASYE GCLSFFPDLD GSVSPALLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-29302362262ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.116290.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024372216.10.0uncharacterized protein LOC112280677
TrEMBLA0A2K1KUE10.0A0A2K1KUE1_PHYPA; Uncharacterized protein
STRINGPP1S25_13V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.17e-24ethylene responsive element binding factor 2