PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_13510V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 480aa MW: 51812.9 Da PI: 6.7835 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.9 | 1.5e-19 | 301 | 352 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +g+++AeIrd + +r++lg+f+tae+Aa a++aa+ k++g Pp3c3_13510V3.1.p 301 PHYRGVRQRP-WGKFAAEIRD----SarQGARVWLGTFDTAEQAAMAYDAAAFKMRG 352 68********.**********....33334*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.4E-15 | 301 | 352 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.58E-21 | 301 | 360 | No hit | No description |
SuperFamily | SSF54171 | 1.18E-22 | 302 | 361 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-31 | 302 | 361 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.67 | 302 | 360 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-35 | 302 | 366 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.5E-11 | 303 | 314 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.5E-11 | 326 | 342 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MNIFSFASTK RGRGLLEGKD TGLDFTKTEE VLQQAQQASK ETFNSQFLNC DQLAALASKT 60 FPSNELVSAC ETSPTSLHST GRTLLKRSRS VENAHFEEQK KPCHRAWVLS NQLRHSLGPN 120 FAETIGQVVK KEAGLATTSS RLDWSSQTPP YVKSLAQGCV AKQATTWPSS SPTDPNSAVV 180 HTREESRLWS DWQNQSSGGG AAPSQLHERA TQFPLNENDS EETALCQVLL GAGKTPPPAK 240 PSPVMRAQPR RHAFPEAAAM GFFKREQPGN LPSSINLIVS STAPRGSYIQ ASLPKVVRSI 300 PHYRGVRQRP WGKFAAEIRD SARQGARVWL GTFDTAEQAA MAYDAAAFKM RGCRALLNFP 360 LQATLPTLPP SPCKTEENTL KSETSSTSAN STTEVLDMGS VKAESPFSLP SAASTTAADP 420 ETTPVALELQ DLDTDFLEDL LSNSHPELDS RPTSSLASYE GCLSFFPDLD GSVSPALLA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-29 | 302 | 362 | 2 | 62 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.11629 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024372216.1 | 0.0 | uncharacterized protein LOC112280677 | ||||
TrEMBL | A0A2K1KUE1 | 0.0 | A0A2K1KUE1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S25_13V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47220.1 | 7e-24 | ethylene responsive element binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_13510V3.1.p |