PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_13480V3.2.p | ||||||||
Common Name | HAP3E | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NF-YB | ||||||||
Protein Properties | Length: 164aa MW: 17903.9 Da PI: 6.9579 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 130.7 | 4.9e-41 | 32 | 111 | 1 | 92 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 vreqdrflPian+srimkk+lPanaki+kdaketvq easdkcqrekrktingddllwa++tlGfedyveplkvyl+kyre Pp3c3_13480V3.2.p 32 VREQDRFLPIANISRIMKKALPANAKIAKDAKETVQ------------EASDKCQREKRKTINGDDLLWAMSTLGFEDYVEPLKVYLHKYRE 111 69********************************98............69*****************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 7.3E-39 | 28 | 126 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.26E-30 | 35 | 131 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.5E-9 | 38 | 69 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 4.8E-12 | 73 | 91 | No hit | No description |
PRINTS | PR00615 | 4.8E-12 | 92 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MAEAGSPGSQ DSPHSDEYGG NHGGGDRDNS SVREQDRFLP IANISRIMKK ALPANAKIAK 60 DAKETVQEAS DKCQREKRKT INGDDLLWAM STLGFEDYVE PLKVYLHKYR EGALTNKAGE 120 SSSGKKEGSN IVSPGVQMVQ QGGYNPYMQA QMMTSGNYQV QHY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 8e-38 | 31 | 111 | 5 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.10907 | 2e-62 | protonema |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU019898 | 2e-83 | EU019898.1 Physcomitrella patens CCAAT-box binding factor HAP3-like protein (HAP3E) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024369282.1 | 1e-115 | nuclear transcription factor Y subunit B-1-like isoform X1 | ||||
Swissprot | O23310 | 4e-51 | NFYB3_ARATH; Nuclear transcription factor Y subunit B-3 | ||||
TrEMBL | A0A0I9QPW3 | 1e-113 | A0A0I9QPW3_PHYPA; CCAAT-box binding factor HAP3-like protein | ||||
STRING | PP1S25_10V6.1 | 1e-112 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 6e-53 | nuclear factor Y, subunit B3 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_13480V3.2.p |
Publications ? help Back to Top | |||
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