PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_13480V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NF-YB | ||||||||
Protein Properties | Length: 224aa MW: 24947 Da PI: 6.1604 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 84.9 | 9.2e-27 | 32 | 80 | 1 | 49 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtse 49 vreqdrflPian+srimkk+lPanaki+kdaketvqecvsefisf+ts+ Pp3c3_13480V3.1.p 32 VREQDRFLPIANISRIMKKALPANAKIAKDAKETVQECVSEFISFITSD 80 69*********************************************86 PP | |||||||
2 | NF-YB | 82.5 | 5.2e-26 | 125 | 173 | 48 | 96 |
NF-YB 48 seasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 + asdkcqrekrktingddllwa++tlGfedyveplkvyl+kyre+eg+ Pp3c3_13480V3.1.p 125 NRASDKCQREKRKTINGDDLLWAMSTLGFEDYVEPLKVYLHKYREIEGA 173 579*******************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.05E-17 | 17 | 80 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.4E-25 | 28 | 79 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.2E-15 | 38 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.9E-18 | 66 | 84 | No hit | No description |
SuperFamily | SSF47113 | 6.52E-18 | 122 | 187 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.0E-22 | 125 | 187 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.1E-4 | 125 | 148 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.9E-18 | 131 | 149 | No hit | No description |
PRINTS | PR00615 | 1.9E-18 | 150 | 168 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MAEAGSPGSQ DSPHSDEYGG NHGGGDRDNS SVREQDRFLP IANISRIMKK ALPANAKIAK 60 DAKETVQECV SEFISFITSD LLSFMWSHVY DAISPFEWHL VLLPPFLGRF TELEGDTMVR 120 KHAMNRASDK CQREKRKTIN GDDLLWAMST LGFEDYVEPL KVYLHKYREI EGALTNKAGE 180 SSSGKKEGSN IVSPGVQMVQ QGGYNPYMQA QMMTSGNYQV QHY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 7e-39 | 32 | 169 | 1 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 7e-39 | 32 | 169 | 1 | 92 | Transcription factor HapC (Eurofung) |
5g49_A | 8e-39 | 31 | 169 | 5 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.10907 | 2e-78 | protonema |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU019898 | 2e-83 | EU019898.1 Physcomitrella patens CCAAT-box binding factor HAP3-like protein (HAP3E) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024369282.1 | 1e-121 | nuclear transcription factor Y subunit B-1-like isoform X1 | ||||
Swissprot | O23310 | 1e-56 | NFYB3_ARATH; Nuclear transcription factor Y subunit B-3 | ||||
TrEMBL | A0A2K1KUG0 | 1e-168 | A0A2K1KUG0_PHYPA; Uncharacterized protein | ||||
STRING | PP1S25_10V6.1 | 1e-133 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP168 | 17 | 170 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 5e-58 | nuclear factor Y, subunit B3 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_13480V3.1.p |
Publications ? help Back to Top | |||
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