PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_11670V3.5.p
Common NamePHYPADRAFT_164706, PpLFY2, PPLFY2
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family LFY
Protein Properties Length: 335aa    MW: 38349.9 Da    PI: 7.4994
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_11670V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY471.45.7e-1441633240385
            FLO_LFY  40 aaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrk 131
                         +a a r+ r+l+elfk++Gv+ +tv+ ++++Gft stL++mkdee+d ++ks++e ++ldll+Ge++Gikaavra+rr + ee  e++r+ 
  Pp3c3_11670V3.5.p  16 GTALAGRESRRLKELFKDFGVQPSTVTVMGQMGFTLSTLINMKDEEVDFVIKSMIEEYHLDLLMGEQFGIKAAVRAKRRLVVEEL-EQQRM- 105
                        4566778899*******************************************************************99888744.45555. PP

            FLO_LFY 132 llsedeetaldalsqeg..lseepvqeekeaagsggeglgeaelvaaeekkseeekkkaskkkqkrkkkkelkseededeeeeededeegsg 221
                                 + als+e     eep+     +   g+++l++ +l++ ++ +s++e kka+k++q+++++ke                    g
  Pp3c3_11670V3.5.p 106 --------DMAALSNEKkrRLEEPSDGLLLK--DGNGSLEALGLLGLTDPDSDSEGKKAAKRRQRKRRSKE-------------------VG 168
                        ........34566666521334444444334..44555669999***999999999999887777777766...................78 PP

            FLO_LFY 222 edgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhc 313
                        +dgeer+rehPfivtepge a+gkknGLDYLfdLyeqC++fL +vq+iake+GekcP+kvtn+vfr+ak +ga yinkPkmr+YvhCYalhc
  Pp3c3_11670V3.5.p 169 DDGEERPREHPFIVTEPGEPAKGKKNGLDYLFDLYEQCGKFLEEVQHIAKEKGEKCPSKVTNEVFRHAKLTGAGYINKPKMRDYVHCYALHC 260
                        99****************************************************************************************** PP

            FLO_LFY 314 LdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerska 385
                        Ld e+sn+lr++fkergenvGaw+qacy plv++a++++wdid +fn++++L+iWYvPtkLrqLCh+er+k+
  Pp3c3_11670V3.5.p 261 LDVETSNNLRKEFKERGENVGAWCQACYFPLVTLARQNEWDIDDLFNQNDKLRIWYVPTKLRQLCHIERMKH 332
                        *********************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016987.4E-11415332IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MVQAEPTALL YKRPDGTALA GRESRRLKEL FKDFGVQPST VTVMGQMGFT LSTLINMKDE  60
EVDFVIKSMI EEYHLDLLMG EQFGIKAAVR AKRRLVVEEL EQQRMDMAAL SNEKKRRLEE  120
PSDGLLLKDG NGSLEALGLL GLTDPDSDSE GKKAAKRRQR KRRSKEVGDD GEERPREHPF  180
IVTEPGEPAK GKKNGLDYLF DLYEQCGKFL EEVQHIAKEK GEKCPSKVTN EVFRHAKLTG  240
AGYINKPKMR DYVHCYALHC LDVETSNNLR KEFKERGENV GAWCQACYFP LVTLARQNEW  300
DIDDLFNQND KLRIWYVPTK LRQLCHIERM KHGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4bhk_A1e-1241663334171FLORICAULA/LEAFY HOMOLOG 1
4bhk_B1e-1241663334171FLORICAULA/LEAFY HOMOLOG 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151158KKAAKRRQ
2158163QRKRRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.1640.0protonema
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in both male and female cones, vegetative buds and needles, but not in the roots.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0522520.0AB052252.1 Physcomitrella patens PPLFY2 mRNA for FLORICAULA/LEAFY homolog 2, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024369276.10.0floricaula/leafy-like protein FL1 isoform X3
RefseqXP_024369278.10.0floricaula/leafy-like protein FL1 isoform X3
RefseqXP_024369279.10.0floricaula/leafy-like protein FL1 isoform X3
RefseqXP_024369280.10.0floricaula/leafy-like protein FL1 isoform X3
RefseqXP_024369281.10.0floricaula/leafy-like protein FL1 isoform X3
SwissprotO044071e-134NEED_PINRA; Floricaula/leafy-like protein FL1
TrEMBLA0A2K1KU340.0A0A2K1KU34_PHYPA; Uncharacterized protein
STRINGPP1S74_224V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.13e-85floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Himi S, et al.
    Evolution of MADS-box gene induction by FLO/LFY genes.
    J. Mol. Evol., 2001 Oct-Nov. 53(4-5): p. 387-93
    [PMID:11675598]
  2. Tanahashi T,Sumikawa N,Kato M,Hasebe M
    Diversification of gene function: homologs of the floral regulator FLO/LFY control the first zygotic cell division in the moss Physcomitrella patens.
    Development, 2005. 132(7): p. 1727-36
    [PMID:15743879]
  3. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]