PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_11670V3.3.p | ||||||||
Common Name | PHYPADRAFT_164706, PpLFY2, PPLFY2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LFY | ||||||||
Protein Properties | Length: 350aa MW: 40090.8 Da PI: 6.8457 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 473.2 | 1.7e-144 | 29 | 347 | 36 | 385 |
FLO_LFY 36 pleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaek 127 p +a a r+ r+l+elfk++Gv+ +tv+ ++++Gft stL++mkdee+d ++ks++e ++ldll+Ge++Gikaavra+rr + ee e+ Pp3c3_11670V3.3.p 29 P--DGTALAGRESRRLKELFKDFGVQPSTVTVMGQMGFTLSTLINMKDEEVDFVIKSMIEEYHLDLLMGEQFGIKAAVRAKRRLVVEEL-EQ 117 3..55667888899*******************************************************************99888744.45 PP FLO_LFY 128 krrkllsedeetaldalsqeg..lseepvqeekeaagsggeglgeaelvaaeekkseeekkkaskkkqkrkkkkelkseededeeeeedede 217 +r+ + als+e eep+ + g+++l++ +l++ ++ +s++e kka+k++q+++++ke Pp3c3_11670V3.3.p 118 QRM---------DMAALSNEKkrRLEEPSDGLLLK--DGNGSLEALGLLGLTDPDSDSEGKKAAKRRQRKRRSKE----------------- 181 555.........34566666521334444444334..44555669999***999999999999887777777766................. PP FLO_LFY 218 egsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCY 309 g+dgeer+rehPfivtepge a+gkknGLDYLfdLyeqC++fL +vq+iake+GekcP+kvtn+vfr+ak +ga yinkPkmr+YvhCY Pp3c3_11670V3.3.p 182 --VGDDGEERPREHPFIVTEPGEPAKGKKNGLDYLFDLYEQCGKFLEEVQHIAKEKGEKCPSKVTNEVFRHAKLTGAGYINKPKMRDYVHCY 271 ..7899************************************************************************************** PP FLO_LFY 310 alhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerska 385 alhcLd e+sn+lr++fkergenvGaw+qacy plv++a++++wdid +fn++++L+iWYvPtkLrqLCh+er+k+ Pp3c3_11670V3.3.p 272 ALHCLDVETSNNLRKEFKERGENVGAWCQACYFPLVTLARQNEWDIDDLFNQNDKLRIWYVPTKLRQLCHIERMKH 347 *************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 4.7E-114 | 28 | 347 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MVDDCPVHNM QAHFDMVQAE PTALLYKRPD GTALAGRESR RLKELFKDFG VQPSTVTVMG 60 QMGFTLSTLI NMKDEEVDFV IKSMIEEYHL DLLMGEQFGI KAAVRAKRRL VVEELEQQRM 120 DMAALSNEKK RRLEEPSDGL LLKDGNGSLE ALGLLGLTDP DSDSEGKKAA KRRQRKRRSK 180 EVGDDGEERP REHPFIVTEP GEPAKGKKNG LDYLFDLYEQ CGKFLEEVQH IAKEKGEKCP 240 SKVTNEVFRH AKLTGAGYIN KPKMRDYVHC YALHCLDVET SNNLRKEFKE RGENVGAWCQ 300 ACYFPLVTLA RQNEWDIDDL FNQNDKLRIW YVPTKLRQLC HIERMKHGE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4bhk_A | 1e-123 | 181 | 348 | 4 | 171 | FLORICAULA/LEAFY HOMOLOG 1 |
4bhk_B | 1e-123 | 181 | 348 | 4 | 171 | FLORICAULA/LEAFY HOMOLOG 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 166 | 173 | KKAAKRRQ |
2 | 173 | 178 | QRKRRS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.164 | 0.0 | protonema |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in both male and female cones, vegetative buds and needles, but not in the roots. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB052252 | 0.0 | AB052252.1 Physcomitrella patens PPLFY2 mRNA for FLORICAULA/LEAFY homolog 2, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024369274.1 | 0.0 | floricaula/leafy-like protein FL1 isoform X1 | ||||
Swissprot | O04407 | 1e-133 | NEED_PINRA; Floricaula/leafy-like protein FL1 | ||||
TrEMBL | Q94IF4 | 0.0 | Q94IF4_PHYPA; FLORICAULA/LEAFY homolog 2 | ||||
STRING | PP1S74_224V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP7018 | 16 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61850.1 | 5e-85 | floral meristem identity control protein LEAFY (LFY) |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_11670V3.3.p |
Entrez Gene | 5928432 |
Publications ? help Back to Top | |||
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