PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_10940V3.2.p | ||||||||
Common Name | PHYPADRAFT_164684 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | G2-like | ||||||||
Protein Properties | Length: 730aa MW: 76963.1 Da PI: 6.4271 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.6 | 1.2e-32 | 408 | 462 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWtpeLH++Fv+av+qLGG+e+AtPk++l++m+v+g+t++hvkSHLQkYRl Pp3c3_10940V3.2.p 408 KTRLRWTPELHDKFVDAVAQLGGPERATPKAVLRVMGVNGITIYHVKSHLQKYRL 462 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.511 | 405 | 466 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-30 | 406 | 462 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.78E-17 | 407 | 463 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.0E-24 | 408 | 462 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-9 | 410 | 461 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.6E-20 | 492 | 537 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 730 aa Download sequence Send to blast |
MPSQMPPLLP SLAAHQQGYD SSGSPRASPG VSQAFPPAGA QFASQPFLPS STAALGGIQY 60 QVCGANSTQQ RSYYSVDTGG GSPSSWQSPS PYAVHPPSTT PEYNPPTMSR HTSSHVAPSS 120 QHNIHHGLPY GSVQDRSSPS FQIPSFHNLS ATFSQQWSSS NSQWVGAESP QSDVHWPSDV 180 MSMGVSSPSS GGSRPAALAQ LSALVPTSDS CLNFHSPRRG VVTAPPGDGG GFRMVGANGV 240 IESDLQMGYQ DTASGRGGGS AASLGQYPAS GLGIPPNTDA ISLCDPLHQV LLEGASDQNI 300 PRDGEGSSQT AEASVNISDW TDPEWMENFS DAYNENGPLD TNNRRVFQQP KRFHPPPRLI 360 PTKDLRTEQQ HSGAASEGSP GASRNSAPVG ATASSSAAAS AAEAASVKTR LRWTPELHDK 420 FVDAVAQLGG PERATPKAVL RVMGVNGITI YHVKSHLQKY RLIPEASSED ARNDRKRNDN 480 SLGPMDLTSS LQMTQALQMQ MEVQKRLHEQ LEIQRELQLR IEAQGQSLKM MLEAQAKASG 540 GFIPRPELFC NASLPAVASE VPKSQVVPAQ PSQASETAPQ QSTNGSSPVR ETSVKRARVE 600 VPSMVIVPQE QFREAYNKQD GPKTGLFLHG CSAPPRDFAA SCQSPPSLPP PPQLSLPSRL 660 LLSIKGHSTD QTDGPSSSTS APPPPPPITD DDGGGGATPQ WHDASPQGGC MLQQPGSMTS 720 TTTSLQASV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-22 | 408 | 461 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-22 | 408 | 461 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 5e-22 | 408 | 461 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-22 | 408 | 461 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-22 | 408 | 461 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-22 | 408 | 461 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-22 | 408 | 461 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-22 | 408 | 461 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-22 | 408 | 461 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-22 | 408 | 461 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-22 | 408 | 461 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-22 | 408 | 461 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.12244 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024371243.1 | 0.0 | uncharacterized protein LOC112280231 isoform X1 | ||||
Refseq | XP_024371244.1 | 0.0 | uncharacterized protein LOC112280231 isoform X1 | ||||
Refseq | XP_024371245.1 | 0.0 | uncharacterized protein LOC112280231 isoform X1 | ||||
Refseq | XP_024371246.1 | 0.0 | uncharacterized protein LOC112280231 isoform X1 | ||||
TrEMBL | A0A2K1KU06 | 0.0 | A0A2K1KU06_PHYPA; Uncharacterized protein | ||||
STRING | PP1S74_161V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 2e-56 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_10940V3.2.p |
Entrez Gene | 5928394 |
Publications ? help Back to Top | |||
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