PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_10430V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 646aa    MW: 71201.6 Da    PI: 6.415
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_10430V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22.1e-1860109255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +gr++AeIrdp++   + r +lg+f+tae+Aa a++ a+++++g
  Pp3c3_10430V3.3.p  60 RYRGVRQRP-WGRFAAEIRDPNT---KERKWLGTFDTAEDAALAYDTAARSMRG 109
                        69*******.**********933...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.0E-3660123IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2160117IPR016177DNA-binding domain
PROSITE profilePS5103221.95760117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-3060116IPR001471AP2/ERF domain
PfamPF008475.4E-1260109IPR001471AP2/ERF domain
CDDcd000182.74E-2960116No hitNo description
PRINTSPR003673.6E-96172IPR001471AP2/ERF domain
PRINTSPR003673.6E-98399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MVGKVQASLA GAHGKQSTHH AMVRSSHHTL VPEIMGRSRP VSQKLKAASI KRAKKVQEGR  60
YRGVRQRPWG RFAAEIRDPN TKERKWLGTF DTAEDAALAY DTAARSMRGP KARTNFVYPT  120
HETCLLSAAA ALAAPNGNSQ HHQVGLIAQK TLGEVLLLSA ANNARNCNWK NTQLNYDEHS  180
NNMFNAPAVQ EQLVEGYRLP GYGCRYVDRK IQPASQQMPP PNALHSPSQD ERLVMPKSPS  240
INKVEVEGFK VSPGKQEQWH CVSDEDQQFR LTQFKRSPTV SSELFVSRYC GAGSQPFQVF  300
DSDDISVSSE NDSPPSDSIM LYKKASTVTS PSQALMQWQF ESKIISGTLD QVVSKYVDSS  360
VIVNFEDTGS ELGVIEPRKC LLSTQVPFSD ESSSSISTMS RSADTASSPT RAAADSPGLF  420
SLSSEVEPSL SNLTANEGCN QSSPVIAVNR FPSRNPDNLE SILPSSLICN RGYHSAAPNA  480
EWVWDKPDLH PLTALDSTAI TSRVDKVTKC DPNHNTWQNL CELPVSITQF LSSDSTNVMN  540
SAKQEQLLQR CEAVSTMNQW QMNLQGVGEN LESFNPMVDW DIFKRCEDSS CMACTHSDTN  600
VSGFCNDLYM LDNVHHAAHS IALQYPSCDN ACLFPQFTED SMLYV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2161116359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024369863.10.0uncharacterized protein LOC112279544 isoform X1
TrEMBLA0A2K1KTW80.0A0A2K1KTW8_PHYPA; Uncharacterized protein
STRINGPP1S74_86V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.14e-21ERF family protein