PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_10430V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 646aa MW: 71201.6 Da PI: 6.415 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.2 | 2.1e-18 | 60 | 109 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp++ + r +lg+f+tae+Aa a++ a+++++g Pp3c3_10430V3.1.p 60 RYRGVRQRP-WGRFAAEIRDPNT---KERKWLGTFDTAEDAALAYDTAARSMRG 109 69*******.**********933...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 9.0E-36 | 60 | 123 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-21 | 60 | 117 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.957 | 60 | 117 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-30 | 60 | 116 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.4E-12 | 60 | 109 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.74E-29 | 60 | 116 | No hit | No description |
PRINTS | PR00367 | 3.6E-9 | 61 | 72 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-9 | 83 | 99 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 646 aa Download sequence Send to blast |
MVGKVQASLA GAHGKQSTHH AMVRSSHHTL VPEIMGRSRP VSQKLKAASI KRAKKVQEGR 60 YRGVRQRPWG RFAAEIRDPN TKERKWLGTF DTAEDAALAY DTAARSMRGP KARTNFVYPT 120 HETCLLSAAA ALAAPNGNSQ HHQVGLIAQK TLGEVLLLSA ANNARNCNWK NTQLNYDEHS 180 NNMFNAPAVQ EQLVEGYRLP GYGCRYVDRK IQPASQQMPP PNALHSPSQD ERLVMPKSPS 240 INKVEVEGFK VSPGKQEQWH CVSDEDQQFR LTQFKRSPTV SSELFVSRYC GAGSQPFQVF 300 DSDDISVSSE NDSPPSDSIM LYKKASTVTS PSQALMQWQF ESKIISGTLD QVVSKYVDSS 360 VIVNFEDTGS ELGVIEPRKC LLSTQVPFSD ESSSSISTMS RSADTASSPT RAAADSPGLF 420 SLSSEVEPSL SNLTANEGCN QSSPVIAVNR FPSRNPDNLE SILPSSLICN RGYHSAAPNA 480 EWVWDKPDLH PLTALDSTAI TSRVDKVTKC DPNHNTWQNL CELPVSITQF LSSDSTNVMN 540 SAKQEQLLQR CEAVSTMNQW QMNLQGVGEN LESFNPMVDW DIFKRCEDSS CMACTHSDTN 600 VSGFCNDLYM LDNVHHAAHS IALQYPSCDN ACLFPQFTED SMLYV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 61 | 116 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024369863.1 | 0.0 | uncharacterized protein LOC112279544 isoform X1 | ||||
TrEMBL | A0A2K1KTW8 | 0.0 | A0A2K1KTW8_PHYPA; Uncharacterized protein | ||||
STRING | PP1S74_86V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18560.1 | 4e-21 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_10430V3.1.p |