PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c2_9730V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | GRAS | ||||||||
Protein Properties | Length: 726aa MW: 81346.6 Da PI: 4.7767 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 276.4 | 8.8e-85 | 317 | 709 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilk 92 ++lL cA a++s++ ++q+l++ l+elas +gd +qRlaay ++AL r+++ + + ++p + +ek+ + + al +f+e s +++ Pp3c2_9730V3.2.p 317 EQLLNLCAGAIASKNIGRTQHLMWVLNELASFTGDGNQRLAAYGLKALFCRITGGKEASATYIRPFHHQEKTlgPKAVHRALVTFHEFSAWHQ 409 689999************************************************555555556777777777555555566667********* PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg........skeeleetgerLakfAeelgvpf 176 +++ ++N+++le ++g++++Hi+D +i +GlQWp L++aL++Rp+gpp +lRiT++ +++++ e +rL fA+ lg++ Pp3c2_9730V3.2.p 410 VAYTVTNETLLEVFAGKSHLHIVDVGIIKGLQWPILIDALSNRPGGPPtKLRITTIRHQNATakttgskqVDAESADFMSRLVTFAKVLGLHC 502 ********************************************998889********8887988987665566778889************* PP GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrll........desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261 e n+ ++ le+++ e+L+++ gE+laV+++++lhrl +++++ s+rd++L+++ sl+P v+vv+e++ad+ se+Fl+rf e + Pp3c2_9730V3.2.p 503 ELNM-YVGPLENIKKEDLKLEDGEVLAVCCQFRLHRLSnlvpkssrHSPTPHLSPRDAFLDFLSSLKPSVLVVSENDADMLSENFLTRFKEII 594 ***9.9*******************************999998888777788889************************************** PP GRAS 262 eyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve. 352 ++ +++fds++ + + e+++ vE e + n +aceg er+er+ + +W +r+++aGF p+ +se++ k+++ ll++++s ++v Pp3c2_9730V3.2.p 595 NFWWTFFDSTHIAFNGREpEAQQIVEYE-GSMIMLNGIACEGVERIERNDRQDNWMSRIRRAGFVPMCISEDTKKTVQVLLQNTASVHWSVRy 686 **********777665554888888888.455557*************************************************955555553 PP GRAS 353 .eesgslvlgWkdrpLvsvSaWr 374 ++ +++ + Wkd+p+ ++S W+ Pp3c2_9730V3.2.p 687 sQNTNCVNMSWKDQPVNFTSLWK 709 37788888**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 41.099 | 290 | 687 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.0E-82 | 317 | 709 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 726 aa Download sequence Send to blast |
MATMEKEESA NIYIDHEDLF RVPPSSNCDQ SILSMTNNWG DERLTQWFDG AIDVEGTPGL 60 GLDLNLAVED EDVQDMAYSD RLWSGIDEPI VLSEGRTRVN YYLAASTVEL DVPEPNDSIS 120 AADMLRLPII HGSYCAPGAN SLNKYTAWSE MPSDAALESV SDMHYGSNSD GSTRPTQGLE 180 DLFDAEEDHQ LEIMSNDADS IELTMEILSD GVMSVSLEEE SDDDSLQELI AYRRSSSSSR 240 HEFEYELMQS PIRPGTGFTA RKKMMHEWVN QGESTFIVPD NIKGADPEEK ITIGNGPHDI 300 LQPREMLSQP GDSRWAEQLL NLCAGAIASK NIGRTQHLMW VLNELASFTG DGNQRLAAYG 360 LKALFCRITG GKEASATYIR PFHHQEKTLG PKAVHRALVT FHEFSAWHQV AYTVTNETLL 420 EVFAGKSHLH IVDVGIIKGL QWPILIDALS NRPGGPPTKL RITTIRHQNA TAKTTGSKQV 480 DAESADFMSR LVTFAKVLGL HCELNMYVGP LENIKKEDLK LEDGEVLAVC CQFRLHRLSN 540 LVPKSSRHSP TPHLSPRDAF LDFLSSLKPS VLVVSENDAD MLSENFLTRF KEIINFWWTF 600 FDSTHIAFNG REPEAQQIVE YEGSMIMLNG IACEGVERIE RNDRQDNWMS RIRRAGFVPM 660 CISEDTKKTV QVLLQNTASV HWSVRYSQNT NCVNMSWKDQ PVNFTSLWKA PSCSRKLCKC 720 NMLHD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 7e-51 | 311 | 709 | 82 | 473 | Protein SHORT-ROOT |
5b3h_B | 2e-51 | 311 | 709 | 28 | 419 | Protein SHORT-ROOT |
5b3h_E | 2e-51 | 311 | 709 | 28 | 419 | Protein SHORT-ROOT |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024369073.1 | 0.0 | nodulation-signaling pathway 1 protein-like | ||||
TrEMBL | A0A2K1L0V1 | 0.0 | A0A2K1L0V1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S84_112V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 5e-52 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c2_9730V3.2.p |