PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_9730V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GRAS
Protein Properties Length: 726aa    MW: 81346.6 Da    PI: 4.7767
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_9730V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS276.48.8e-853177092374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilk 92 
                       ++lL  cA a++s++  ++q+l++ l+elas +gd +qRlaay ++AL  r+++  +  +  ++p + +ek+   + +  al +f+e s +++
  Pp3c2_9730V3.1.p 317 EQLLNLCAGAIASKNIGRTQHLMWVLNELASFTGDGNQRLAAYGLKALFCRITGGKEASATYIRPFHHQEKTlgPKAVHRALVTFHEFSAWHQ 409
                       689999************************************************555555556777777777555555566667********* PP

              GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg........skeeleetgerLakfAeelgvpf 176
                       +++ ++N+++le ++g++++Hi+D +i +GlQWp L++aL++Rp+gpp +lRiT++ +++++           e     +rL  fA+ lg++ 
  Pp3c2_9730V3.1.p 410 VAYTVTNETLLEVFAGKSHLHIVDVGIIKGLQWPILIDALSNRPGGPPtKLRITTIRHQNATakttgskqVDAESADFMSRLVTFAKVLGLHC 502
                       ********************************************998889********8887988987665566778889************* PP

              GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrll........desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                       e n+ ++  le+++ e+L+++ gE+laV+++++lhrl         +++++  s+rd++L+++ sl+P v+vv+e++ad+ se+Fl+rf e +
  Pp3c2_9730V3.1.p 503 ELNM-YVGPLENIKKEDLKLEDGEVLAVCCQFRLHRLSnlvpkssrHSPTPHLSPRDAFLDFLSSLKPSVLVVSENDADMLSENFLTRFKEII 594
                       ***9.9*******************************999998888777788889************************************** PP

              GRAS 262 eyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve. 352
                       ++ +++fds++  +   + e+++ vE e  +    n +aceg er+er+ +  +W +r+++aGF p+ +se++ k+++ ll++++s  ++v  
  Pp3c2_9730V3.1.p 595 NFWWTFFDSTHIAFNGREpEAQQIVEYE-GSMIMLNGIACEGVERIERNDRQDNWMSRIRRAGFVPMCISEDTKKTVQVLLQNTASVHWSVRy 686
                       **********777665554888888888.455557*************************************************955555553 PP

              GRAS 353 .eesgslvlgWkdrpLvsvSaWr 374
                        ++ +++ + Wkd+p+ ++S W+
  Pp3c2_9730V3.1.p 687 sQNTNCVNMSWKDQPVNFTSLWK 709
                       37788888**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.099290687IPR005202Transcription factor GRAS
PfamPF035143.0E-82317709IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MATMEKEESA NIYIDHEDLF RVPPSSNCDQ SILSMTNNWG DERLTQWFDG AIDVEGTPGL  60
GLDLNLAVED EDVQDMAYSD RLWSGIDEPI VLSEGRTRVN YYLAASTVEL DVPEPNDSIS  120
AADMLRLPII HGSYCAPGAN SLNKYTAWSE MPSDAALESV SDMHYGSNSD GSTRPTQGLE  180
DLFDAEEDHQ LEIMSNDADS IELTMEILSD GVMSVSLEEE SDDDSLQELI AYRRSSSSSR  240
HEFEYELMQS PIRPGTGFTA RKKMMHEWVN QGESTFIVPD NIKGADPEEK ITIGNGPHDI  300
LQPREMLSQP GDSRWAEQLL NLCAGAIASK NIGRTQHLMW VLNELASFTG DGNQRLAAYG  360
LKALFCRITG GKEASATYIR PFHHQEKTLG PKAVHRALVT FHEFSAWHQV AYTVTNETLL  420
EVFAGKSHLH IVDVGIIKGL QWPILIDALS NRPGGPPTKL RITTIRHQNA TAKTTGSKQV  480
DAESADFMSR LVTFAKVLGL HCELNMYVGP LENIKKEDLK LEDGEVLAVC CQFRLHRLSN  540
LVPKSSRHSP TPHLSPRDAF LDFLSSLKPS VLVVSENDAD MLSENFLTRF KEIINFWWTF  600
FDSTHIAFNG REPEAQQIVE YEGSMIMLNG IACEGVERIE RNDRQDNWMS RIRRAGFVPM  660
CISEDTKKTV QVLLQNTASV HWSVRYSQNT NCVNMSWKDQ PVNFTSLWKA PSCSRKLCKC  720
NMLHD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B7e-5131170982473Protein SHORT-ROOT
5b3h_B2e-5131170928419Protein SHORT-ROOT
5b3h_E2e-5131170928419Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024369073.10.0nodulation-signaling pathway 1 protein-like
TrEMBLA0A2K1L0V10.0A0A2K1L0V1_PHYPA; Uncharacterized protein
STRINGPP1S84_112V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40821525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.15e-52GRAS family protein