PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_9580V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HSF
Protein Properties Length: 526aa    MW: 57650.1 Da    PI: 4.7006
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_9580V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1101.7e-34591502102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d++++ ++sws+  nsf+v+++ +fa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll
  Pp3c2_9580V3.1.p  59 FLTKTYDMVDDPATDPVVSWSTGHNSFIVWNPPDFAQELLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGRRDLL 142
                       9****************************************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+k 
  Pp3c2_9580V3.1.p 143 RTIHRRKP 150
                       *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.2E-3852142IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.4E-3455148IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-6055148IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-195982IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-3059148IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-1997109IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434098122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-19110122IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MVSQVVKTDP HWPPLEESMG QERYSLNSDV VPSSSVPGFH NLSAPQPMDG LQSTAPPPFL  60
TKTYDMVDDP ATDPVVSWST GHNSFIVWNP PDFAQELLPK YFKHNNFSSF VRQLNTYGFR  120
KVDPDRWEFA NEGFLRGRRD LLRTIHRRKP ATHSQQSAQQ QQQHQQTDQG SVGPCVEVGK  180
FGLEGEIERL KRDKNVLMME LVRLRQQQQN TERDLQAMGQ RLLTTENRQQ HMMSFLAKAM  240
QNPSFLAQLM QQSENKRLAA TVRKKRRLPK QDSSADDSVS SDSPADNQIV AFHSNGNADA  300
NGARAMIMQF FNSTDAASAP SLDSGPLEAL FRDLGSAPSG PDALNRQSGV TLTEMNISGL  360
GDALPGPAVM DASTEVPDLP MPQHLTSRIP RLEGALSMNK GSIHSGAEIK PEDITGESME  420
FASEGGRTSL EGDEVISNLG SPAVSAANDI FWEQFLSETP SGVDHELDGD LDLGPHDKEA  480
DGDEIVGDSV EILAGDEHGG EVKNWWSKKP SVEQLSVQMG QLAPG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-255714818120Heat shock factor protein 1
5d5u_B7e-255714827129Heat shock factor protein 1
5d5v_B7e-255714827129Heat shock factor protein 1
5d5v_D7e-255714827129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.33070.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024368496.10.0heat stress transcription factor A-2e-like
TrEMBLA0A2K1L0T80.0A0A2K1L0T8_PHYPA; Uncharacterized protein
STRINGPP1S84_95V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-104heat shock factor 3