PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_620V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 583aa    MW: 62607.2 Da    PI: 6.88
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_620V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.3e-09380427455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +     kK   Ka +L + ++Y++ Lq
  Pp3c2_620V3.2.p 380 SHSLAERVRREKISERMKYLQDLVPGC-----KKvTGKAVMLDEIINYVQFLQ 427
                      8**************************.....77799***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-16374438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.11E-10374431No hitNo description
PROSITE profilePS5088815.516376426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-17376438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-6380427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-10382432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MAIMAPARDQ MLMSLMHSSA LPLSYSTDAV MPYASDLERV VEPSASILYP ATWQTLQEMQ  60
ISRSAEQTLI AGATSRGCSL GPSTPRSTLV NSNRLLAMDN SPSASSACVV GNQLNIMEDA  120
RIRGVMGRTS LAGNSLGGTR SWDAENIAVN PFKGGLALQG VGASAPAFTS DPALAERVGQ  180
VSSFACGTAK YPYSAPRKTG EMPTVFEVQA SSSLESKCLP ASAASVQPEL EAVEGITEAA  240
MGRGTTPHEP VEVTVTALKE NHNSFSSAEQ LGVSRGESPV KLPSHDTACY RSKRKQQDPS  300
SPDPKISEGE ASSNPKRSKG EADRGDKETK EDNTKSSETS AESTESPKSA QKEKENHKSK  360
EFSKQDYIHV RARRGQATDS HSLAERVRRE KISERMKYLQ DLVPGCKKVT GKAVMLDEII  420
NYVQFLQRQV EHLSMRLASV CSGHADMALE SQLLSNKEML QTQLPSTLSS SSETKADAFG  480
LMQQLDARKQ VGPGFLDGTP CRRVEYRFLG SGLDVTAAPF ASLADITRHT VPSFHNSATI  540
PQSTGWDSGE LQSLVERGLS HHTSRLGAVE GQLPVGHMKA EF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.76940.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024362551.10.0transcription factor bHLH49-like
TrEMBLA0A2K1KZK90.0A0A2K1KZK9_PHYPA; Uncharacterized protein
STRINGPP1S226_51V6.20.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.11e-40cryptochrome-interacting basic-helix-loop-helix 1