PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_590V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GATA
Protein Properties Length: 385aa    MW: 41549.2 Da    PI: 6.758
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_590V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.17.6e-16269305135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cg  +  Tp++Rrgp g++tLCnaCGl+++ kg+
  Pp3c2_590V3.2.p 269 CVHCGIGErsTPMMRRGPAGPRTLCNACGLMWANKGV 305
                      ****866666************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.6E-12124159IPR010399Tify domain
PROSITE profilePS5132015.687124159IPR010399Tify domain
PfamPF062009.4E-15126158IPR010399Tify domain
PROSITE profilePS5101713.225193235IPR010402CCT domain
PfamPF062032.4E-15193235IPR010402CCT domain
SMARTSM004011.1E-12263316IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.064263322IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-11266312No hitNo description
Gene3DG3DSA:3.30.50.101.0E-15268310IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.58E-15268311No hitNo description
PROSITE patternPS003440269296IPR000679Zinc finger, GATA-type
PfamPF003201.3E-13269305IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MSDAEPLVHP QSLQLHHSLH PHNLNHGLSH AQHAMHEMHV HGHGEADGHG HVRVDQRVQG  60
HLEGDHAHGN HGHHGHGMHN NEENEAEVED HDDDAADEEG LDEANMHSDG GGNPNDGPAP  120
LTVRTQSSTQ LTLSYQGEVY VFDAVPPEKV QAVLLLLGGR EIPPGMSGVN ISNNHHHHKG  180
LTDLPARMNM PQRLASLTRF REKRKERCYD KKIRYTVRKE VAQRMQRKKG QFASSRPSQE  240
EGAPVANWDG TQALGQPVGA GGVQPEVICV HCGIGERSTP MMRRGPAGPR TLCNACGLMW  300
ANKGVLRDLS KNLSIAPGVQ QQLILQSQQI ILQQLQHQVA GSQHSAENTS QVVDVQGSLQ  360
GEVDVQKNIA GIVAAGGGPV LAAG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.31340.0gametophore| protonema
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024368631.10.0GATA transcription factor 24-like isoform X1
RefseqXP_024368632.10.0GATA transcription factor 24-like isoform X1
RefseqXP_024368633.10.0GATA transcription factor 24-like isoform X1
RefseqXP_024368634.10.0GATA transcription factor 24-like isoform X1
SwissprotQ8GXL72e-76GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A2K1KZK60.0A0A2K1KZK6_PHYPA; Uncharacterized protein
STRINGPP1S226_47V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.25e-77ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]