PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_5625V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 675aa    MW: 73983 Da    PI: 5.2637
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_5625V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-18157206255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr++  +grWvAeIr+p     r  +r +lg+f ta eAa+a+++a++ ++g
  Pp3c2_5625V3.1.p 157 QYRGVRQRQ-WGRWVAEIREP-----RlrTRMWLGTFSTALEAARAYDEAALVYHG 206
                       6*****999.**********9.....445************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.82E-20157216IPR016177DNA-binding domain
SMARTSM003801.3E-34157220IPR001471AP2/ERF domain
CDDcd000183.28E-29157215No hitNo description
Gene3DG3DSA:3.30.730.106.5E-29157215IPR001471AP2/ERF domain
PROSITE profilePS5103222.339157214IPR001471AP2/ERF domain
PfamPF008476.5E-12158206IPR001471AP2/ERF domain
PRINTSPR003672.5E-9158169IPR001471AP2/ERF domain
PRINTSPR003672.5E-9180196IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MRDVRRSSSD ISVLLLRRHW ASFFFLFSFF SFFLHFANLA AINMTEIAMG MARQQQQQQH  60
SASATSSCVP VFDKQEEDQT PLVVPEQLEA HHDHVDSNSD TNSSASDVDS KTGVATADTK  120
TRGRKKKGTA ASSSSGSGNG QERVRKRRGG PENGLHQYRG VRQRQWGRWV AEIREPRLRT  180
RMWLGTFSTA LEAARAYDEA ALVYHGPGAR LNLPHETTQK SENVPQLGNQ GVEYHYGHLK  240
TNKFMGLGVP ANLLIGSDVA STDKYFMSVD TSRLRQSSSC SVENIGQPAG FNLNRDPEWW  300
ISCGSFRPNS IPQSVPNFSN VPPSTSSCNV GSERFHLSQV PINFQTIPIS CKLPPDRHEL  360
VQGFPVPQQL SAGLFHSKYT QTLGLRSPNI HCELGSDCPY ADRQGRGLHR NDTHNTGAVM  420
FAKSSTTQTD SFFESNQNEP LKVPIGDASP DMAPTFTATP HQPEQPVAVL VPGESTAMFN  480
PPPPSDVSCQ YCSNVEAPKK FECPISEGSA ENSFVTEFEK FDFESDAFQS MDSSIESQHD  540
KLVSGVTAAT AVMDHGPPVS SEASPVSLQG ADFGDEGSPS SFWPDSTTSS HQSLNASESC  600
PWSNIQEERY MLKLCPVFED MNGCWDDAGS PILPPPSLLD LPDLPNLSFD SLTEVFCDTP  660
KVNDVDKAAN FPDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-17147221679Ethylene-responsive transcription factor ERF096
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.29301e-124protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024369071.10.0uncharacterized protein LOC112279150
TrEMBLA0A2K1L0D10.0A0A2K1L0D1_PHYPA; Uncharacterized protein
STRINGPP1S7_352V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.15e-20ERF family protein