PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_4600V3.1.p
Common NamePHYPADRAFT_158848
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bZIP
Protein Properties Length: 364aa    MW: 39818.8 Da    PI: 4.2814
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_4600V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.35.2e-11176229558
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                       kr rr+ +NR +A+rsR+RK+ +++eLe   ++L  eN++L  +    +++v+k
  Pp3c2_4600V3.1.p 176 KRKRRMSSNRASAQRSRLRKQGRLDELEILTAQLRLENSTLSRKSILAEQLVKK 229
                       9****************************************9887666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.3E-8172239IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.8E-8174219No hitNo description
PROSITE profilePS5021710.105174219IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.17E-7176220No hitNo description
PfamPF001708.0E-9176219IPR004827Basic-leucine zipper domain
CDDcd147021.06E-15177225No hitNo description
PROSITE patternPS000360179194IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MCHGLIEQRP ATICIPDLLR DLAYQEPDYN IYVDSYPSVD DVIDLPMVDD ELLPEPSSLS  60
DDALADIVKE YSSAVKKLDP EDVGDAGADA LGSSGVLSAW LDITKDGFCA GKDSTPKKSA  120
TVASETSCEG TVENVSNAVE SLPKSRKARK SASKDQGHAQ HDSEMDDEAP VLIDEKRKRR  180
MSSNRASAQR SRLRKQGRLD ELEILTAQLR LENSTLSRKS ILAEQLVKKY QVEKSDLAKK  240
VEELRKELEQ ARQARAQGSP YYGTGTLPNG NHISGLCKKV DEGESLSGES VGSEMSPQSS  300
HDSDNTNFDV EQRSISSTDP QSDISADLVD PFDLDQFDVS FSDGVPEFVQ EEWCESFSEC  360
LNA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.46400.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024399762.10.0basic leucine zipper 63-like
RefseqXP_024399771.10.0basic leucine zipper 63-like
TrEMBLA0A2K1L0720.0A0A2K1L072_PHYPA; Uncharacterized protein
STRINGPP1S7_246V6.20.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18160.16e-12basic leucine-zipper 2
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]