PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c2_36690V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 189aa MW: 21014.8 Da PI: 5.028 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5e-19 | 7 | 57 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +g+Wv+eIr+p + +kr++lg++ +aeeAa a++aa ++l+g+ Pp3c2_36690V3.2.p 7 QYRGVRVRR-WGKWVSEIREPQT---KKRIWLGSYRSAEEAAHAYDAALLCLRGP 57 6*****998.**********943...4*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.181 | 7 | 64 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-22 | 7 | 65 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-30 | 7 | 65 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.06E-28 | 7 | 66 | No hit | No description |
SMART | SM00380 | 7.4E-35 | 7 | 70 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.1E-12 | 8 | 56 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-9 | 8 | 19 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-9 | 30 | 46 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MSSSQHQYRG VRVRRWGKWV SEIREPQTKK RIWLGSYRSA EEAAHAYDAA LLCLRGPIAN 60 LNFPNQRPAL PSGSPGHYST REVQAAAAGA AAASVGRRFS FSEFMSPTRS SDSSDNEVKD 120 ITYPPGSHGT SSSQYVSWND TEFAEDQFDV ERDLYNALLI PPPYYNDTRD DSDNDDNPLD 180 GGFSLWNN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-14 | 1 | 66 | 8 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024359814.1 | 1e-138 | ethylene-responsive transcription factor ERF017-like | ||||
TrEMBL | A0A2K1L4G9 | 1e-137 | A0A2K1L4G9_PHYPA; Uncharacterized protein | ||||
STRING | PP1S1_34V6.1 | 1e-137 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21910.1 | 5e-11 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c2_36690V3.2.p |