PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_35540V3.1.p
Common NamePHYPADRAFT_229532
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family CO-like
Protein Properties Length: 496aa    MW: 55449.6 Da    PI: 6.3012
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_35540V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box30.76.3e-102266442
           zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                       r C+ + +k ++++C  ++ +lCe+C  + H+       H++vpl
  Pp3c2_35540V3.1.p 22 RACDVCMNKSARWYCGADRAYLCEKCDIQVHSAnalaqrHERVPL 66
                       78*****************************66899999*99986 PP
2CCT67.92.6e-23429472144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        Rea+++R+keKr++R+F+K+irYe+RK +Ae+RpR+KGrFvk++
  Pp3c2_35540V3.1.p 429 REASVMRFKEKRRSRLFSKRIRYEVRKLNAEKRPRMKGRFVKKN 472
                        9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003369.1E-101966IPR000315B-box-type zinc finger
PROSITE profilePS5011910.6081966IPR000315B-box-type zinc finger
CDDcd000217.76E-92266No hitNo description
PfamPF006431.2E-82266IPR000315B-box-type zinc finger
PfamPF062039.6E-18429471IPR010402CCT domain
PROSITE profilePS5101715.686429471IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MTTRTACKSI VTAMAIAGQA SRACDVCMNK SARWYCGADR AYLCEKCDIQ VHSANALAQR  60
HERVPLTPNA ESTILARKDS PDTKNAKEIL LRKPTMSKKL QAPPVNVLPS RKRFRTCRLH  120
PFRQAKHSPG AKHAPNQLEE GDAKMKEDLL MFSETFETEN FLVDVTQKVP SLIVVMQDSS  180
PSSSELDVCS DFFQELRSDS QEVRSSPWSD SLAAFFKGKA AQEDCFPDDD TSDQFFLPDA  240
FDDGINICCD MDGNISVAGD ACFISNDIPG LSGFEDFGSR EFVGDSLSFD FAFHDTLPRA  300
FEGVGADTSE MGGISSKYNL VGAENDQFRT GPFVKFFSKI PRNEKKMHLT PENIKKEAKE  360
ILLCCREGLS EVNLGLAPTL RLNYEDVITA WSDRGEPWFY PHDCTSDATD AGLVPDMAQE  420
GADDCQGSRE ASVMRFKEKR RSRLFSKRIR YEVRKLNAEK RPRMKGRFVK KNSSGFDFRL  480
DPFLSSETHV LAHPH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1439455RRSRLFSKRIRYEVRKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024356792.10.0uncharacterized protein LOC112272859
RefseqXP_024356800.10.0uncharacterized protein LOC112272859
RefseqXP_024356808.10.0uncharacterized protein LOC112272859
RefseqXP_024356818.10.0uncharacterized protein LOC112272859
TrEMBLA9SGK80.0A9SGK8_PHYPA; Predicted protein
STRINGPP1S76_147V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8021649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.14e-24B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]