PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_33310V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 361aa    MW: 40077 Da    PI: 7.6998
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_33310V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.2e-16293343154
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                        s+y GVr+++ +g+++Ae+rd + ng    ++lg+f+tae+Aa a+++a+ +++
  Pp3c2_33310V3.1.p 293 SHYIGVRRRP-WGKFAAEVRDSKRNG--VWVWLGTFDTAEQAALAYDRAAFNMR 343
                        78********.**********43355..***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.0E-13293343IPR001471AP2/ERF domain
CDDcd000183.29E-26293352No hitNo description
SuperFamilySSF541711.63E-20293354IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.5E-27294353IPR001471AP2/ERF domain
PROSITE profilePS5103220.745294352IPR001471AP2/ERF domain
SMARTSM003804.7E-28294358IPR001471AP2/ERF domain
PRINTSPR003674.1E-8295306IPR001471AP2/ERF domain
PRINTSPR003674.1E-8318334IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MTAKVGVQQC GLQSWELDCL TTRTVYQKKV LESLHRFLIV EDENLDHFIL ESQNGQLPYR  60
CPVPLSPKSP LPFLTSNFTS SSSRQTGGAY GVPCSSGQLI NGACTNGDVS TSEMDQACDN  120
SSQNSNSNKL ISTLKRKFGG SFVKEVRSTM KPFVKELTEG DFLCLDNLQE QPVSMWSKET  180
SSTESSNSLT TRRPAISPLT IPPSPQPDNP CRSPEDFRRE FSGPLPMDQN DSDDMFIYSI  240
LKDASHSAAD SSILQETTFD PMKSIQVKIK QERSPRATTT SQKPAEMKPS VKSHYIGVRR  300
RPWGKFAAEV RDSKRNGVWV WLGTFDTAEQ AALAYDRAAF NMRDSRAILN FPTRITTDSS  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-28294355263ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-28294357568ATERF1
3gcc_A2e-28294357568ATERF1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00548DAPTransfer from AT5G47220Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385422.11e-96ethylene-responsive transcription factor ERF062-like
TrEMBLA0A2K1L4430.0A0A2K1L443_PHYPA; Uncharacterized protein
STRINGPP1S265_50V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.11e-38ethylene responsive element binding factor 2