PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_32150V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 438aa    MW: 48665.9 Da    PI: 8.3147
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_32150V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.72.4e-28176235160
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        ++Dgy+WrKYGqK+v +s++prsYY+Ct+agC+v+k+v r+ ed  +v+  YegeH+h+k
  Pp3c2_32150V3.1.p 176 VEDGYKWRKYGQKTVLSSPYPRSYYKCTTAGCRVRKQVSRCVEDRGLVIASYEGEHHHPK 235
                        58********************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-29162235IPR003657WRKY domain
SuperFamilySSF1182908.76E-26170235IPR003657WRKY domain
PROSITE profilePS5081128.644171236IPR003657WRKY domain
SMARTSM007741.9E-30176235IPR003657WRKY domain
PfamPF031061.6E-22177234IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MMEKSGPDEI QEVVAPSFED NEDLAALVQQ YFESIISPSG SLKTEGFPKY DSFCSSPCGQ  60
ICCRRGSNGG TLTHDSSSLS PPSSCVSDPS RTTETGSLKP ACFRDDECKD GMKLPHDGEG  120
GDDAPLDDGP LIERKNFSCA YVCIITSPRW AKKKKGLKKV TDPRHIVKRR TDLDMVEDGY  180
KWRKYGQKTV LSSPYPRSYY KCTTAGCRVR KQVSRCVEDR GLVIASYEGE HHHPKISQQT  240
CSSKTSHSQN TAKILLDSLN PHNNRQAKQA GYSLPNLLPI NTILPYPDHF GYLMQRRWPI  300
FDPHQLQPPS VLDSMNMMMV YQVMKLKQEL QARTQEFMNF ATQGSGISDL LAMNLLNVHP  360
EVYPQARAEP GLSLVDLMRL ASRTHWDQSG QKSSQPEPSS NPRCRRSNTI RTTAPIPGLS  420
TVVSRRQSGG SSNDSDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-21167233874Probable WRKY transcription factor 4
2lex_A1e-21167233874Probable WRKY transcription factor 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024367828.10.0uncharacterized protein LOC112278489
TrEMBLA0A2K1L3Z00.0A0A2K1L3Z0_PHYPA; Uncharacterized protein
STRINGPP1S426_27V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.15e-26WRKY DNA-binding protein 4