PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_31440V3.1.p
Common NamePHYPADRAFT_98910
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 651aa    MW: 70893 Da    PI: 7.3341
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_31440V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.7e-11445495155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h   Er+RR+ +N+ + ++r llP++    s K +Ka+++   ++YI+ +q
  Pp3c2_31440V3.1.p 445 QRESHIWSERQRRRSMNQLYTTIRALLPHQ----SVKTDKATVVMDIINYIRAMQ 495
                        7999*************************9....9*****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.79E-11443499No hitNo description
PROSITE profilePS5088813.649444494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-12445497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-9445495IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-13445518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-6450500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5167110.249574650IPR002912ACT domain
Gene3DG3DSA:3.30.70.2600.001582632No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MEPSRRPASL QSERFWSAVR MQSELMAVVT NVAITGESGY GAAPDNPHAT ITHPKTSYDS  60
DTRYRILSSR VHEHLNGCLA DQLMDIQQGM GVEASTPQLH VEDMPQADRM SVDNDAANLH  120
AFANEFDTGW PTSGNESALV EDLHTRRLQL NGFQSFHNQI FNECAKINFH SNSSPVSAQQ  180
LIMMCNQQKG VQNSRSGSWF SDRIEHPNTM CRPTSDNVFT NRDHASSSSQ FDKMQPLGGK  240
IGDNVTHPNC LPSVAQKQSQ APRLQTELVG CAPISAFYSA EPTCFQSPPQ MQSIHNAVSF  300
SLGDEIGQTV PIGANASQEN GCATTKQVPN QIDETGNCNA RLHSCEDQGS LDLQRVWCQP  360
SQAITSFQRC GSATTSCGHA SGLAPDRSKP GSTRTSEDGG KSSPPVHRTP SGGKHRALTN  420
PKKGRKQKLP GKTTTQAFLN KAVSQRESHI WSERQRRRSM NQLYTTIRAL LPHQSVKTDK  480
ATVVMDIINY IRAMQADLEV LSRRRDQLLA ALNLRRQPSQ VFSAHGLTCV DHTSDASVLT  540
AVTTLPPPGS VSCLTSFLGN NVAIHICGQH VFVTITSAPQ SRPGLLAQII STLTNYNLDV  600
LSATVNSRDN TTAYALSVET SQSVESLGDD LHTQLQIVIN NFSPSDAKEP *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024403043.10.0uncharacterized protein LOC112295533
TrEMBLA0A2K1L3U20.0A0A2K1L3U2_PHYPA; Uncharacterized protein
STRINGPP1S371_38V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12261548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-14bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]