PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_310V3.1.p
Common NamePHYPADRAFT_169970
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family G2-like
Protein Properties Length: 463aa    MW: 49035.2 Da    PI: 8.2311
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_310V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.85.9e-3452106155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+rlrWtpeLH+rFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  Pp3c2_310V3.1.p  52 KQRLRWTPELHDRFVDAVTQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 106
                      79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.05149109IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.5E-3350107IPR009057Homeodomain-like
SuperFamilySSF466891.11E-1751106IPR009057Homeodomain-like
TIGRFAMsTIGR015579.4E-2652107IPR006447Myb domain, plants
PfamPF002493.7E-954105IPR001005SANT/Myb domain
PfamPF143793.3E-25138184IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MYQNKKFSTT SLMPQRSASQ APEPRGSSAT GASTNSASSP GGGSGGGGSA AKQRLRWTPE  60
LHDRFVDAVT QLGGPDRATP KGVLRVMGVQ GLTIYHVKSH LQKYRLAKYI PESSSDGGKS  120
EKKNPADVLP TLDATSGIQI TEALRMQMEV QKRLHEQLEV QRHLQLRIEA QGKYLQKIIE  180
EQQRIGSITN LQGTTETGAP AAEEANQRQV VSVVDAKPKL PLAPVTTSET PTSNSAATAP  240
VSSSGLGLPQ AAILLSQQLS ENQYAYGTFM NPPLPEGSPV QGPSKRIRIE DGAGQPQTGQ  300
LATQQGPGIP QPGQTQGCVS GAFHPTQSDF QSGATFSPRQ NGGSYTQDPL NQQSFPQLPP  360
QAVFGNQAFL PANNTSTPVN AQVQGTGAQA TSDRCTSGST RQHPEVSGEL DTGAFLNNDR  420
KASLLPSDGD RGDRSSAPLP QAGMYEQWDH VNRGGQLFHE NG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-2452109158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-2452109158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-2452109158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-2452109158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.22290.0protonema
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024360639.10.0protein PHOSPHATE STARVATION RESPONSE 1-like
TrEMBLA0A2K1KZM90.0A0A2K1KZM9_PHYPA; Uncharacterized protein
STRINGPP1S226_24V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.18e-70G2-like family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]