PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c2_30770V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | GRAS | ||||||||
Protein Properties | Length: 649aa MW: 71759.6 Da PI: 5.8088 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 469 | 2.7e-143 | 279 | 647 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 ++lL++cAeavs++d+ la+ l+a+l++ +s +gdpmqRlaay++e+L ar+a s++++y +l+++e + + + l+a+++++ev+P++kf Pp3c2_30770V3.2.p 279 EQLLVACAEAVSNNDMPLANVLIAQLNQEVSIHGDPMQRLAAYMVEGLVARVAASGKSIYTSLKCKEPP---TRDLLSAMQILYEVCPYFKF 367 689*****************************************************************9...899***************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183 ++++aN aI ea+++e+rvHiiDf+i qG+QW +L++aLa+Rp+gpp++RiTg+++p +g + +e +g+rLa++Ae++gvpf f++ va Pp3c2_30770V3.2.p 368 GYMAANGAIAEAFQNESRVHIIDFQIAQGTQWTTLIRALAARPGGPPHVRITGIDDPMPGptPNVGVEMVGKRLANLAEAVGVPFVFHP-VA 458 *********************************************************99999999************************.7* PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275 k+ +++e ++L+ ++gEalaVn++lqlh+++desv+++++rd++L+++k+l+Pkv+++veqe+++n+++F+ rfleal+yysa+f+sl+ +l Pp3c2_30770V3.2.p 459 KKGTEIEAWMLERQQGEALAVNFALQLHHMPDESVCTSNPRDRMLHMIKGLNPKVMTLVEQESNTNTAPFFPRFLEALSYYSAIFESLDITL 550 ******************************************************************************************** PP GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367 +res+er++vE+++l+r+ivn++aceg +r+erhe ++kWr+rl++aGF+p+pls+++++++k+ll+ +++ yr++ee g+l+lgWk+rpL Pp3c2_30770V3.2.p 551 ARESKERVNVEQQCLARDIVNIIACEGIDRVERHEMMGKWRARLTMAGFRPYPLSQTVNNTIKTLLESYSD-KYRLKEEGGALFLGWKNRPL 641 **********************************************************************5.5******************* PP GRAS 368 vsvSaW 373 ++ SaW Pp3c2_30770V3.2.p 642 IVSSAW 647 ****** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 70.595 | 252 | 629 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.2E-141 | 279 | 647 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 649 aa Download sequence Send to blast |
MSVQYEPELG SMVLTPGFPP GKEREYFSDT ANSQQAPNYF GARTSYANDH RQNAYGLKIK 60 SHGSPISPLS PQDSSHAASD NGQRMSGGWN SASYQSESSS HSDTSLEGHV KQEEADYYGR 120 QYGHIEQSEG SLAYHNSPSS VLKPMPYPGA IAQGYSMPNY QQDGRHVPDG QYAQSQSNCA 180 QRNPEMVHML QVLENALLDD DDDDDHRAPE GNWADTIEKF LAADNSAIKP SPVTSRTTQP 240 DYGKQQCNEN AINFTGAVTA RVEELALQKL VVATRSRSEQ LLVACAEAVS NNDMPLANVL 300 IAQLNQEVSI HGDPMQRLAA YMVEGLVARV AASGKSIYTS LKCKEPPTRD LLSAMQILYE 360 VCPYFKFGYM AANGAIAEAF QNESRVHIID FQIAQGTQWT TLIRALAARP GGPPHVRITG 420 IDDPMPGPTP NVGVEMVGKR LANLAEAVGV PFVFHPVAKK GTEIEAWMLE RQQGEALAVN 480 FALQLHHMPD ESVCTSNPRD RMLHMIKGLN PKVMTLVEQE SNTNTAPFFP RFLEALSYYS 540 AIFESLDITL ARESKERVNV EQQCLARDIV NIIACEGIDR VERHEMMGKW RARLTMAGFR 600 PYPLSQTVNN TIKTLLESYS DKYRLKEEGG ALFLGWKNRP LIVSSAWH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 3e-71 | 285 | 647 | 25 | 377 | Protein SCARECROW |
5b3h_D | 3e-71 | 285 | 647 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.462 | 0.0 | protonema |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024368210.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_024368212.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_024368213.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_024368214.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_024368215.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_024368216.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_024368217.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_024368218.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_024368219.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_024368220.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_024368221.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_024368222.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Swissprot | Q8GVE1 | 1e-173 | CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2 | ||||
Swissprot | Q8H125 | 1e-173 | SCL5_ARATH; Scarecrow-like protein 5 | ||||
TrEMBL | A0A2K1L3Q8 | 0.0 | A0A2K1L3Q8_PHYPA; Uncharacterized protein | ||||
STRING | PP1S456_3V6.2 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50600.1 | 1e-175 | scarecrow-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c2_30770V3.2.p |
Publications ? help Back to Top | |||
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