PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c2_26900V3.1.p

Common Name

PHYPADRAFT_160509

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Dof

Protein Properties

Length: 615aa MW: 67670.2 Da PI: 8.4193

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c2_26900V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	50.5	4.2e-16	219	257	6	44
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGG 44 ++cprC+s++ kf y+nn l+qPry C +C+ ++t+GG Pp3c2_26900V3.1.p 219 KECPRCNSKEVKFKYFNNKKLNQPRYQCLSCKDFFTHGG 257 68************************************9 PP
2	zf-Dof	27.7	5.5e-09	311	341	7	37
zf-Dof 7 kcprCdstntkfCyynnyslsqPryfCkaCr 37 c +C s+nt f y nn +l qPry C C+ Pp3c2_26900V3.1.p 311 LCRKCGSKNTAFKYLNNGQLDQPRYKCLDCK 341 699***************************8 PP
3	zf-Dof	37.8	4e-12	414	454	6	46
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGal 46 ++cp C+ t+t+f y+nn +++qPry C C++y+t + Pp3c2_26900V3.1.p 414 KPCPSCKKTKTRFKYFNNKNMKQPRYECLDCHQYFTYKTEF 454 58*********************************976655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.90.10.10	5.4E-6	201	250	No hit	No description
ProDom	PD007478	1.0E-7	218	257	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.0E-16	219	258	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	15.528	219	273	IPR003851	Zinc finger, Dof-type
Gene3D	G3DSA:3.90.10.10	5.4E-6	300	344	No hit	No description
Pfam	PF02701	4.8E-9	311	343	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.3E-12	414	460	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-6	415	461	IPR003851	Zinc finger, Dof-type
Gene3D	G3DSA:3.90.10.10	5.4E-6	416	447	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 615 aa Download sequence Send to blast
MTNRAESSKA LLYTLLSSLD SDAQMHVELK SLKNTLHFGT SSRLDDADTK LELKTALGEE 60 DEIRNLCYRA SPSSLHSKSA DLKAILEEPG EKTLYIEIRK SPSAGGGCGA KSLHTNFLSL 120 SDGHRSCSDV YESTRLADYM LQSDHQFLEI ESGAGHSNVD DMQRPGSANE ELLETAHAIV 180 NMADLKSNTV LPQEYHEDGT PRRRQKVAVE PKELVGIPKE CPRCNSKEVK FKYFNNKKLN 240 QPRYQCLSCK DFFTHGGKKL ATEAASPSAS VQLMLPDGSF NILPIQSLDG KGKERKRKAK 300 EPPQFAGMEK LCRKCGSKNT AFKYLNNGQL DQPRYKCLDC KGMFQLHNKR VRPSSSGDVN 360 TAALLSDLSK ETTSVESASV PLESALLICG PRVAKQTERK RKAMEPEHLV GVVKPCPSCK 420 KTKTRFKYFN NKNMKQPRYE CLDCHQYFTY KTEFNQVNSG AFGGDQGFVA SITAVVNEGN 480 SEGPNGSDRN GRDKEVEGNT SLTGRSDSER IYEQDLLRLN GEGDANAINS GHLKDRMKDG 540 GSGLASSGFI GTNMRVRDTG EVINVRRGLG QVEREGGQGG GTALEVIGFR RMLDLPGSLE 600 KHDKVFDSTG VKQQ*

Sequence ? help Back to Top

Protein Sequence Length: 615 aa Download sequence Send to blast

MTNRAESSKA LLYTLLSSLD SDAQMHVELK SLKNTLHFGT SSRLDDADTK LELKTALGEE  60
DEIRNLCYRA SPSSLHSKSA DLKAILEEPG EKTLYIEIRK SPSAGGGCGA KSLHTNFLSL  120
SDGHRSCSDV YESTRLADYM LQSDHQFLEI ESGAGHSNVD DMQRPGSANE ELLETAHAIV  180
NMADLKSNTV LPQEYHEDGT PRRRQKVAVE PKELVGIPKE CPRCNSKEVK FKYFNNKKLN  240
QPRYQCLSCK DFFTHGGKKL ATEAASPSAS VQLMLPDGSF NILPIQSLDG KGKERKRKAK  300
EPPQFAGMEK LCRKCGSKNT AFKYLNNGQL DQPRYKCLDC KGMFQLHNKR VRPSSSGDVN  360
TAALLSDLSK ETTSVESASV PLESALLICG PRVAKQTERK RKAMEPEHLV GVVKPCPSCK  420
KTKTRFKYFN NKNMKQPRYE CLDCHQYFTY KTEFNQVNSG AFGGDQGFVA SITAVVNEGN  480
SEGPNGSDRN GRDKEVEGNT SLTGRSDSER IYEQDLLRLN GEGDANAINS GHLKDRMKDG  540
GSGLASSGFI GTNMRVRDTG EVINVRRGLG QVEREGGQGG GTALEVIGFR RMLDLPGSLE  600
KHDKVFDSTG VKQQ*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.1999	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024359748.1	0.0	uncharacterized protein LOC112274455
Refseq	XP_024359756.1	0.0	uncharacterized protein LOC112274455
Refseq	XP_024359765.1	0.0	uncharacterized protein LOC112274455
Refseq	XP_024359776.1	0.0	uncharacterized protein LOC112274455
Refseq	XP_024359782.1	0.0	uncharacterized protein LOC112274455
Refseq	XP_024365391.1	0.0	uncharacterized protein LOC112277398
Refseq	XP_024365399.1	0.0	uncharacterized protein LOC112277398
Refseq	XP_024365408.1	0.0	uncharacterized protein LOC112277398
Refseq	XP_024365418.1	0.0	uncharacterized protein LOC112277398
Refseq	XP_024365428.1	0.0	uncharacterized protein LOC112277398
TrEMBL	A0A2K1L354	0.0	A0A2K1L354_PHYPA; Uncharacterized protein
STRING	PP1S22_366V6.1	0.0	(Physcomitrella patens)
STRING	PP1S22_373V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G47655.1	1e-12	Dof family protein

Link Out ? help Back to Top
Phytozome	Pp3c2_26900V3.1.p
Entrez Gene	5919711

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]