PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c2_2660V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

bHLH

Protein Properties

Length: 338aa MW: 37311.3 Da PI: 9.3424

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c2_2660V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.9	9.7e-10	133	180	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P++ sk Ka +L + ++Y++sLq Pp3c2_2660V3.1.p 133 SHSLAERVRREKISERMKFLQDLVPSC----SKVTGKAVMLDEIINYVQSLQ 180 8***********************9....566***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.95E-17	127	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.81E-10	127	184	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-16	129	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.529	129	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.1E-7	133	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-9	135	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MMGSESWGEG QIQQDDSASS EPTATLRSRP GHALGKRKGS ASKDSIVTAK VLKSAEKKAK 60 CLSTKVAGAS ANASKAHVDE VRVTLKDQQS PESEPSGEMS PRSTLKSRSK SQVMHPKQHY 120 IHVRARRGQA TDSHSLAERV RREKISERMK FLQDLVPSCS KVTGKAVMLD EIINYVQSLQ 180 RQIEFLSMKL AAVDPRLDIN LLNLLNKEPP QARSPETILM SPDIIAGYRD YQTQLQIQQI 240 NNYNVDWRSV GTLCDAYLKR SVNIALLPHA PAAYNECFID SLTQTLNGVC DAGDLQSIMH 300 TSSTPMRQEF FGQDTHNFAP GFPGLRHSTT GQLKVDH*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024397838.1	0.0	transcription factor bHLH49-like
Swissprot	Q9CAA9	3e-49	BH049_ARATH; Transcription factor bHLH49
TrEMBL	A0A2K1KZV7	0.0	A0A2K1KZV7_PHYPA; Uncharacterized protein
STRING	PP1S7_37V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP58	16	313

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.2	3e-50	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pp3c2_2660V3.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]