PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c2_26200V3.3.p

Common Name

PHYPADRAFT_84014

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

NZZ/SPL

Protein Properties

Length: 660aa MW: 70756.1 Da PI: 7.242

Description

NZZ/SPL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c2_26200V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NOZZLE	22.2	2.4e-07	44	87	40	84
NOZZLE 40 kksrgrkpgsktaqqkqkkptlrgmgvaklerfiieeekkklvva 84 s gr g k ++ qkkp rg+gva+ler +++e+ k+ +++ Pp3c2_26200V3.3.p 44 VSSEGRSRGRKV-KNAQKKPPQRGLGVAQLERLRLQEQSKQEAAC 87 457889888886.57899*******************99997543 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF08744	1.7E-5	39	87	IPR014855	Plant transcription factor NOZZLE

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 660 aa Download sequence Send to blast
MATLLMRSSE VAAVEKLTMA SREQVRLQQE KVPGHFEQEG PHKVSSEGRS RGRKVKNAQK 60 KPPQRGLGVA QLERLRLQEQ SKQEAACLAS IQVLPSFSFT DHNGGICVLP LKSGTVSHQQ 120 PGLSSALSFN NGRTGPSEKL HYLAEDGHQL GKVAVDGEGF QSIMSFANSD HSTAGTFARH 180 AQGGQSIALI FSRNREIREH SYGCNSMRTV PSLSSLSSLS ERPGSRGLGS CGTSAYAEGS 240 SGKFPPCVQG CHGSPPSSTA KSSLLSNALT TGVNLVDSLA SNAEQGKQRL SEMDRESVYM 300 FQVTSNGVGD AGMVDAKLFP AVGKNGAVSL FTSNNLQCFE SSSGPAKLRR LPQDRAEVPV 360 AGVVTNCGRP KELSSFQSFS SNNTWSASEK ICGQKRPWYD LNENTSKSMH SEGLDLNAPV 420 GKVEAVQSGC YASLSQGHES TAGIHHTAGI TGSGLDNTLP LLKDKACAAL QENEAQNLST 480 TTDVDYHSVE SFLKVSCPTK SKIKDCCSSV CSPCESPITR QRCLSSSEVP MLMEADHETS 540 GDFLTLGIST RSYPISPQLG VEVNSKESMN HEDSHQVKRI KNFQDDALQL QMFNHREESA 600 PSVTDGIHSP CTDTSFFSAV GLSCRFTSTS SSNVSEVCLK LTGREEKRDF LDLNLKLAL*

Sequence ? help Back to Top

Protein Sequence Length: 660 aa Download sequence Send to blast

MATLLMRSSE VAAVEKLTMA SREQVRLQQE KVPGHFEQEG PHKVSSEGRS RGRKVKNAQK  60
KPPQRGLGVA QLERLRLQEQ SKQEAACLAS IQVLPSFSFT DHNGGICVLP LKSGTVSHQQ  120
PGLSSALSFN NGRTGPSEKL HYLAEDGHQL GKVAVDGEGF QSIMSFANSD HSTAGTFARH  180
AQGGQSIALI FSRNREIREH SYGCNSMRTV PSLSSLSSLS ERPGSRGLGS CGTSAYAEGS  240
SGKFPPCVQG CHGSPPSSTA KSSLLSNALT TGVNLVDSLA SNAEQGKQRL SEMDRESVYM  300
FQVTSNGVGD AGMVDAKLFP AVGKNGAVSL FTSNNLQCFE SSSGPAKLRR LPQDRAEVPV  360
AGVVTNCGRP KELSSFQSFS SNNTWSASEK ICGQKRPWYD LNENTSKSMH SEGLDLNAPV  420
GKVEAVQSGC YASLSQGHES TAGIHHTAGI TGSGLDNTLP LLKDKACAAL QENEAQNLST  480
TTDVDYHSVE SFLKVSCPTK SKIKDCCSSV CSPCESPITR QRCLSSSEVP MLMEADHETS  540
GDFLTLGIST RSYPISPQLG VEVNSKESMN HEDSHQVKRI KNFQDDALQL QMFNHREESA  600
PSVTDGIHSP CTDTSFFSAV GLSCRFTSTS SSNVSEVCLK LTGREEKRDF LDLNLKLAL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024398461.1	0.0	uncharacterized protein LOC112293375
TrEMBL	A0A2K1L320	0.0	A0A2K1L320_PHYPA; Uncharacterized protein
STRING	PP1S119_4V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27330.1	4e-06	sporocyteless (SPL)

Link Out ? help Back to Top
Phytozome	Pp3c2_26200V3.3.p
Entrez Gene	5933143

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]