PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c2_25760V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 177aa MW: 20105.8 Da PI: 9.0735 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.3 | 3.3e-12 | 49 | 93 | 2 | 48 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaia 48 ++kG+r+++ gr+ +eIr + ++++++lg+f taeeAa+a +a Pp3c2_25760V3.2.p 49 RFKGIRYRPELGRYISEIRPA---QpRKRKIWLGTFKTAEEAARAFDA 93 69***************9982...3567*****************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 14.842 | 49 | 110 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.2E-8 | 49 | 113 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-17 | 49 | 108 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-12 | 49 | 106 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.17E-13 | 49 | 109 | No hit | No description |
Pfam | PF00847 | 4.6E-7 | 49 | 92 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 177 aa Download sequence Send to blast |
MQGEATVAIK QYMATSGRYG DDYGVVCKRS PPGRAKFLEF RHDVVQQERF KGIRYRPELG 60 RYISEIRPAQ PRKRKIWLGT FKTAEEAARA FDAGIFYTKK PVEYNFEDSP SILEPLPENL 120 SPEQEHIEIQ KRAKAAAARV EPSQSERPHP GVECYVLHEA DLTSSRTARG CQLHLQ* |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC159398 | 0.0 | AC159398.2 Physcomitrella patens clone JGIASYB-5K21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024401788.1 | 1e-129 | ethylene-responsive transcription factor RAP2-9-like | ||||
TrEMBL | A0A2K1L2Z9 | 1e-127 | A0A2K1L2Z9_PHYPA; Uncharacterized protein | ||||
STRING | PP1S119_43V6.1 | 1e-107 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G25470.1 | 3e-15 | C-repeat/DRE binding factor 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c2_25760V3.2.p |