PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_25760V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 177aa    MW: 20105.8 Da    PI: 9.0735
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_25760V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.33.3e-124993248
                AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaia 48
                       ++kG+r+++  gr+ +eIr     + ++++++lg+f taeeAa+a +a
  Pp3c2_25760V3.1.p 49 RFKGIRYRPELGRYISEIRPA---QpRKRKIWLGTFKTAEEAARAFDA 93
                       69***************9982...3567*****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.84249110IPR001471AP2/ERF domain
SMARTSM003807.2E-849113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-1749108IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1249106IPR016177DNA-binding domain
CDDcd000183.17E-1349109No hitNo description
PfamPF008474.6E-74992IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MQGEATVAIK QYMATSGRYG DDYGVVCKRS PPGRAKFLEF RHDVVQQERF KGIRYRPELG  60
RYISEIRPAQ PRKRKIWLGT FKTAEEAARA FDAGIFYTKK PVEYNFEDSP SILEPLPENL  120
SPEQEHIEIQ KRAKAAAARV EPSQSERPHP GVECYVLHEA DLTSSRTARG CQLHLQ*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1593980.0AC159398.2 Physcomitrella patens clone JGIASYB-5K21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024401788.11e-129ethylene-responsive transcription factor RAP2-9-like
TrEMBLA0A2K1L2Z91e-127A0A2K1L2Z9_PHYPA; Uncharacterized protein
STRINGPP1S119_43V6.11e-107(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.13e-15C-repeat/DRE binding factor 2