PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_2510V3.4.p
Common NamePHYPADRAFT_104466, WRKY8
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 396aa    MW: 43172.7 Da    PI: 10.2531
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_2510V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.64.8e-32324381359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+vers edp+++++tYegeHnh+
  Pp3c2_2510V3.4.p 324 DDYSWRKYGQKPIKGSPHPRGYYKCSSIrGCPARKHVERSMEDPTMLIVTYEGEHNHP 381
                       99***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.4E-16275320IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.0E-33310382IPR003657WRKY domain
PROSITE profilePS5081131.227317383IPR003657WRKY domain
SuperFamilySSF1182902.09E-27320382IPR003657WRKY domain
SMARTSM007742.6E-38322382IPR003657WRKY domain
PfamPF031062.7E-27324381IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MGALEVLDYN FTMGKRDRDY EVKEAARMGI ESARKLLQSL AQAQPAVVDK ECDAIAEAAI  60
SKFQKVVSLL SRTGHARFRR RTRDATVAGY AGVFLENSNF FTDNAQAQEI KERFVSSGHG  120
SPSPFTPIAP SKPPQFPELQ RILYQVFPPS SPASTAEASV PSGSTHSVLH PTAKVHHLLH  180
SAQQGQQTQQ GLPEHILRPL AAAYRPVLPP NPFNKLDVSY KGPSPGNSSL SSGPLESATT  240
VSFSNISVDR KSQQTGKSSD HPSLLPPRPQ ASNSRKKCSG KSDENGATCA ILGRCHCSKR  300
RKLRLKRTIQ VRAISSKLAD IPPDDYSWRK YGQKPIKGSP HPRGYYKCSS IRGCPARKHV  360
ERSMEDPTML IVTYEGEHNH PQSSSANGGL SVQSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-213183801071WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.147950.0gametophore| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8896190.0DQ889619.1 Physcomitrella patens WRKY transcription factor 2 (WRKY2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024369190.10.0probable WRKY transcription factor 15
TrEMBLA9RFR50.0A9RFR5_PHYPA; Transcription factor WRKY 2
STRINGPP1S7_13V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.15e-55WRKY DNA-binding protein 21
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]