PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_24140V3.8.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 708aa    MW: 75630.5 Da    PI: 6.103
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_24140V3.8.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.52.7e-0982106226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        +++ C ++++t tC++G +C++ H+
  Pp3c2_24140V3.8.p  82 GQKVCAYYMATRTCSFGVTCRYDHP 106
                        6789********************8 PP
2zf-CCCH39.11.3e-12138162327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        ++ C +f++tG+C+yG++C+F+H++
  Pp3c2_24140V3.8.p 138 EPDCAYFMKTGECRYGPQCRFNHPK 162
                        689********************96 PP
3zf-CCCH22.52e-07202224527
                        --SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                        +C f+ +tG Ck+G+ C+++H++
  Pp3c2_24140V3.8.p 202 NCVFYGKTGSCKHGPACRYNHPE 224
                        79*******************96 PP
4zf-CCCH35.51.7e-11572598127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++ C f+ +tG+C++G++CkF+H+p
  Pp3c2_24140V3.8.p 572 PGEPDCTFYIKTGECSFGATCKFHHPP 598
                        5789*********************97 PP
5zf-CCCH32.91.1e-10628652327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C ++++tG Ck+G +Ck+ H+p
  Pp3c2_24140V3.8.p 628 EAPCAYYMKTGACKFGQTCKYDHPP 652
                        589********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.20280108IPR000571Zinc finger, CCCH-type
SMARTSM003560.01580107IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-782106IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6135162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413135163IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-10138162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6140166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5141163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.427197225IPR000571Zinc finger, CCCH-type
SMARTSM003560.026197224IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4202224IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99571599IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-5571598IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-8573598IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5575600IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-4577597IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.812625653IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-4625652IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-8628652IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5629653IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4630650IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MTAASHQVVY AISTPPHGVV HYEYYTQQVP QTTTATPFAA FAQYSSSAPP PSGAIAMDQS  60
ADGAAKRLSD GGENGLYPQR PGQKVCAYYM ATRTCSFGVT CRYDHPAWLP PGGIPSWKEV  120
TAVGTPVDPC LLPQRPAEPD CAYFMKTGEC RYGPQCRFNH PKEKLEPSNT DDQYSAASSA  180
AFGNPATAYN TNGLPLRPGE GNCVFYGKTG SCKHGPACRY NHPEIVFPAG GRTGQTLQPQ  240
QAVYVQPPQQ PNSQYQMVQE AKLYMQATPD YSYPATTYQS TTPTYTTAPT AYPVATTYST  300
AAPAYASPAA PYTGQQVITE YVYPGGAMMQ VYPAGSTTQG YPPETPTQSY SQGTPAQSFP  360
PGTPTQGYSQ TRTFSLGTIM QQYTQGTTAL GLCQVQSYPS GTTSQTYPPG TKSHPQQLTY  420
PPGTTYASTH LLGTPQSCPP ATQTFLPGTP DQSQGQTAQT YPPGTTDQAV EYAYAAGQQP  480
QCQEDYTYAT QQVSRNGTEY MYSTEQPGQG ASDQYATTVY TSEASGQPST GDYACTAAHN  540
SQEYMYAAAQ AYHQNVTSVY ATPMSLPHPQ RPGEPDCTFY IKTGECSFGA TCKFHHPPDR  600
IPTGIPKPAK NQGLVKLSLA GLPRRETEAP CAYYMKTGAC KFGQTCKYDH PPPQEIIAKA  660
VEQARGEIPV SCDVSMPGSN ESDSQDATPL PPGTDAPAVT AACASST*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024368794.10.0zinc finger CCCH domain-containing protein 12-like isoform X3
TrEMBLA0A2K1L7Z10.0A0A2K1L7Z1_PHYPA; Uncharacterized protein
STRINGPP1S135_32V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-41floral homeotic protein (HUA1)