PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c2_24140V3.7.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C3H | ||||||||
Protein Properties | Length: 721aa MW: 76825.7 Da PI: 6.2211 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.4 | 2.7e-09 | 102 | 126 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C ++++t tC++G +C++ H+ Pp3c2_24140V3.7.p 102 GQKVCAYYMATRTCSFGVTCRYDHP 126 6789********************8 PP | |||||||
2 | zf-CCCH | 39.1 | 1.3e-12 | 158 | 182 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tG+C+yG++C+F+H++ Pp3c2_24140V3.7.p 158 EPDCAYFMKTGECRYGPQCRFNHPK 182 689********************96 PP | |||||||
3 | zf-CCCH | 22.5 | 2e-07 | 222 | 244 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C f+ +tG Ck+G+ C+++H++ Pp3c2_24140V3.7.p 222 NCVFYGKTGSCKHGPACRYNHPE 244 79*******************96 PP | |||||||
4 | zf-CCCH | 35.5 | 1.7e-11 | 585 | 611 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C f+ +tG+C++G++CkF+H+p Pp3c2_24140V3.7.p 585 PGEPDCTFYIKTGECSFGATCKFHHPP 611 5789*********************97 PP | |||||||
5 | zf-CCCH | 32.9 | 1.1e-10 | 641 | 665 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG Ck+G +Ck+ H+p Pp3c2_24140V3.7.p 641 EAPCAYYMKTGACKFGQTCKYDHPP 665 589********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.015 | 100 | 127 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.202 | 100 | 128 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.7E-7 | 102 | 126 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.413 | 155 | 183 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-6 | 155 | 182 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.4E-10 | 158 | 182 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.28E-6 | 160 | 186 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-5 | 161 | 183 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.026 | 217 | 244 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.427 | 217 | 245 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-4 | 222 | 244 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-5 | 584 | 611 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.99 | 584 | 612 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.3E-8 | 586 | 611 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-5 | 588 | 613 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.3E-4 | 590 | 610 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.812 | 638 | 666 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-4 | 638 | 665 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-8 | 641 | 665 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-5 | 642 | 666 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-4 | 643 | 663 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0061158 | Biological Process | 3'-UTR-mediated mRNA destabilization | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003730 | Molecular Function | mRNA 3'-UTR binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 721 aa Download sequence Send to blast |
MTAASHQVVY AISTPPHGVV HYEYYTQQVP QTTTATPFAA FAQYSSSAPP PSGAIAMDQS 60 ADGAAKRLSD GVTDDMTGPN KKPRSNSSGV SGENGLYPQR PGQKVCAYYM ATRTCSFGVT 120 CRYDHPAWLP PGGIPSWKEV TAVGTPVDPC LLPQRPAEPD CAYFMKTGEC RYGPQCRFNH 180 PKEKLEPSNT DDQYSAASSA AFGNPATAYN TNGLPLRPGE GNCVFYGKTG SCKHGPACRY 240 NHPEIVFPAG GRTGQTLQPQ QAVYVQPPQQ PNSQYQMVQA TPDYSYPATT YQSTTPTYTT 300 APTAYPVATT YSTAAPAYAS PAAPYTGQQV ITEYVYPGGA MMQVYPAGST TQGYPPETPT 360 QSYSQGTPAQ SFPPGTPTQG YSQTRTFSLG TIMQQYTQGT TALGLCQVQS YPSGTTSQTY 420 PPGTKSHPQQ LTYPPGTTYA STHLLGTPQS CPPATQTFLP GTPDQSQGQT AQTYPPGTTD 480 QAVEYAYAAG QQPQCQEDYT YATQQVSRNG TEYMYSTEQP GQGASDQYAT TVYTSEASGQ 540 PSTGDYACTA AHNSQEYMYA AAQAYHQNVT SVYATPMSLP HPQRPGEPDC TFYIKTGECS 600 FGATCKFHHP PDRIPTGIPK PAKNQGLVKL SLAGLPRRET EAPCAYYMKT GACKFGQTCK 660 YDHPPPQEII AKAVEQARGE IPVSCDVSMP GSNESDSQDA TPLPPGTDAP AVTAACASST 720 * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024368793.1 | 0.0 | zinc finger CCCH domain-containing protein 12-like isoform X2 | ||||
TrEMBL | A0A2K1L7Z1 | 0.0 | A0A2K1L7Z1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S135_32V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 2e-41 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
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Phytozome | Pp3c2_24140V3.7.p |