PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_24140V3.6.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 728aa    MW: 77689.8 Da    PI: 6.222
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_24140V3.6.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.42.8e-09102126226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        +++ C ++++t tC++G +C++ H+
  Pp3c2_24140V3.6.p 102 GQKVCAYYMATRTCSFGVTCRYDHP 126
                        6789********************8 PP
2zf-CCCH391.3e-12158182327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        ++ C +f++tG+C+yG++C+F+H++
  Pp3c2_24140V3.6.p 158 EPDCAYFMKTGECRYGPQCRFNHPK 182
                        689********************96 PP
3zf-CCCH22.52e-07222244527
                        --SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                        +C f+ +tG Ck+G+ C+++H++
  Pp3c2_24140V3.6.p 222 NCVFYGKTGSCKHGPACRYNHPE 244
                        79*******************96 PP
4zf-CCCH35.51.7e-11592618127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++ C f+ +tG+C++G++CkF+H+p
  Pp3c2_24140V3.6.p 592 PGEPDCTFYIKTGECSFGATCKFHHPP 618
                        5789*********************97 PP
5zf-CCCH32.91.1e-10648672327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C ++++tG Ck+G +Ck+ H+p
  Pp3c2_24140V3.6.p 648 EAPCAYYMKTGACKFGQTCKYDHPP 672
                        589********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.015100127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.202100128IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-7102126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413155183IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6155182IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-10158182IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-6160186IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5161183IPR000571Zinc finger, CCCH-type
SMARTSM003560.026217244IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.427217245IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4222244IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-5591618IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99591619IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-8593618IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5595620IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-4597617IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-4645672IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.812645673IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-8648672IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5649673IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4650670IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MTAASHQVVY AISTPPHGVV HYEYYTQQVP QTTTATPFAA FAQYSSSAPP PSGAIAMDQS  60
ADGAAKRLSD GVTDDMTGPN KKPRSNSSGV SGENGLYPQR PGQKVCAYYM ATRTCSFGVT  120
CRYDHPAWLP PGGIPSWKEV TAVGTPVDPC LLPQRPAEPD CAYFMKTGEC RYGPQCRFNH  180
PKEKLEPSNT DDQYSAASSA AFGNPATAYN TNGLPLRPGE GNCVFYGKTG SCKHGPACRY  240
NHPEIVFPAG GRTGQTLQPQ QAVYVQPPQQ PNSQYQMVQE AKLYMQATPD YSYPATTYQS  300
TTPTYTTAPT AYPVATTYST AAPAYASPAA PYTGQQVITE YVYPGGAMMQ VYPAGSTTQG  360
YPPETPTQSY SQGTPAQSFP PGTPTQGYSQ TRTFSLGTIM QQYTQGTTAL GLCQVQSYPS  420
GTTSQTYPPG TKSHPQQLTY PPGTTYASTH LLGTPQSCPP ATQTFLPGTP DQSQGQTAQT  480
YPPGTTDQAV EYAYAAGQQP QCQEDYTYAT QQVSRNGTEY MYSTEQPGQG ASDQYATTVY  540
TSEASGQPST GDYACTAAHN SQEYMYAAAQ AYHQNVTSVY ATPMSLPHPQ RPGEPDCTFY  600
IKTGECSFGA TCKFHHPPDR IPTGIPKPAK NQGLVKLSLA GLPRRETEAP CAYYMKTGAC  660
KFGQTCKYDH PPPQEIIAKA VEQARGEIPV SCDVSMPGSN ESDSQDATPL PPGTDAPAVT  720
AACASST*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024368792.10.0zinc finger CCCH domain-containing protein 12-like isoform X1
TrEMBLA0A2K1L7Z10.0A0A2K1L7Z1_PHYPA; Uncharacterized protein
STRINGPP1S135_32V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP67541519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-41floral homeotic protein (HUA1)